(15 nodes) Mixed, incl. EMI domain, and Type I transforming growth factor beta receptor binding network (Carlito syrichta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LRG1	Leucine-rich alpha-2-glycoprotein. (343 aa)
	EMCN	Endomucin. (135 aa)
	MYCT1	LOW QUALITY PROTEIN: myc target protein 1. (229 aa)
	CD93	Complement component C1q receptor. (648 aa)
	ADGRL4	Adhesion G protein-coupled receptor L4 isoform X2; Belongs to the G-protein coupled receptor 2 family. (690 aa)
	CYYR1	Cysteine and tyrosine-rich protein 1. (128 aa)
	SPARCL1	SPARC-like protein 1. (652 aa)
	CDH5	Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins. (786 aa)
	ADGRF5	Adhesion G protein-coupled receptor F5 isoform X1; Belongs to the G-protein coupled receptor 2 family. (1345 aa)
	USHBP1	Usher syndrome type-1C protein-binding protein 1. (694 aa)
	PTPRB	Receptor-type tyrosine-protein phosphatase beta isoform X1. (2216 aa)
	PECAM1	Platelet endothelial cell adhesion molecule. (737 aa)
	ENG	Endoglin. (578 aa)
	MMRN2	Multimerin-2. (941 aa)
	EGFL7	Epidermal growth factor-like protein 7. (268 aa)

Your Current Organism:

Carlito syrichta

NCBI taxonomy Id: 1868482
Other names: C. syrichta, Philippine tarsier, Tarsius syrichta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRF5	ADGRL4	ENSTSYP00000008824	ENSTSYP00000007760	Adhesion G protein-coupled receptor F5 isoform X1; Belongs to the G-protein coupled receptor 2 family.	Adhesion G protein-coupled receptor L4 isoform X2; Belongs to the G-protein coupled receptor 2 family.	0.478
ADGRF5	CDH5	ENSTSYP00000008824	ENSTSYP00000008797	Adhesion G protein-coupled receptor F5 isoform X1; Belongs to the G-protein coupled receptor 2 family.	Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins.	0.842
ADGRF5	CYYR1	ENSTSYP00000008824	ENSTSYP00000008332	Adhesion G protein-coupled receptor F5 isoform X1; Belongs to the G-protein coupled receptor 2 family.	Cysteine and tyrosine-rich protein 1.	0.424
ADGRF5	EMCN	ENSTSYP00000008824	ENSTSYP00000002775	Adhesion G protein-coupled receptor F5 isoform X1; Belongs to the G-protein coupled receptor 2 family.	Endomucin.	0.646
ADGRF5	MMRN2	ENSTSYP00000008824	ENSTSYP00000025980	Adhesion G protein-coupled receptor F5 isoform X1; Belongs to the G-protein coupled receptor 2 family.	Multimerin-2.	0.620
ADGRF5	PTPRB	ENSTSYP00000008824	ENSTSYP00000016845	Adhesion G protein-coupled receptor F5 isoform X1; Belongs to the G-protein coupled receptor 2 family.	Receptor-type tyrosine-protein phosphatase beta isoform X1.	0.863
ADGRF5	SPARCL1	ENSTSYP00000008824	ENSTSYP00000008453	Adhesion G protein-coupled receptor F5 isoform X1; Belongs to the G-protein coupled receptor 2 family.	SPARC-like protein 1.	0.420
ADGRF5	USHBP1	ENSTSYP00000008824	ENSTSYP00000012015	Adhesion G protein-coupled receptor F5 isoform X1; Belongs to the G-protein coupled receptor 2 family.	Usher syndrome type-1C protein-binding protein 1.	0.576
ADGRL4	ADGRF5	ENSTSYP00000007760	ENSTSYP00000008824	Adhesion G protein-coupled receptor L4 isoform X2; Belongs to the G-protein coupled receptor 2 family.	Adhesion G protein-coupled receptor F5 isoform X1; Belongs to the G-protein coupled receptor 2 family.	0.478
ADGRL4	CD93	ENSTSYP00000007760	ENSTSYP00000005913	Adhesion G protein-coupled receptor L4 isoform X2; Belongs to the G-protein coupled receptor 2 family.	Complement component C1q receptor.	0.426
ADGRL4	CYYR1	ENSTSYP00000007760	ENSTSYP00000008332	Adhesion G protein-coupled receptor L4 isoform X2; Belongs to the G-protein coupled receptor 2 family.	Cysteine and tyrosine-rich protein 1.	0.422
ADGRL4	EMCN	ENSTSYP00000007760	ENSTSYP00000002775	Adhesion G protein-coupled receptor L4 isoform X2; Belongs to the G-protein coupled receptor 2 family.	Endomucin.	0.874
ADGRL4	MYCT1	ENSTSYP00000007760	ENSTSYP00000005081	Adhesion G protein-coupled receptor L4 isoform X2; Belongs to the G-protein coupled receptor 2 family.	LOW QUALITY PROTEIN: myc target protein 1.	0.522
ADGRL4	SPARCL1	ENSTSYP00000007760	ENSTSYP00000008453	Adhesion G protein-coupled receptor L4 isoform X2; Belongs to the G-protein coupled receptor 2 family.	SPARC-like protein 1.	0.434
CD93	ADGRL4	ENSTSYP00000005913	ENSTSYP00000007760	Complement component C1q receptor.	Adhesion G protein-coupled receptor L4 isoform X2; Belongs to the G-protein coupled receptor 2 family.	0.426
CD93	CDH5	ENSTSYP00000005913	ENSTSYP00000008797	Complement component C1q receptor.	Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins.	0.484
CD93	CYYR1	ENSTSYP00000005913	ENSTSYP00000008332	Complement component C1q receptor.	Cysteine and tyrosine-rich protein 1.	0.810
CD93	MMRN2	ENSTSYP00000005913	ENSTSYP00000025980	Complement component C1q receptor.	Multimerin-2.	0.635
CD93	PECAM1	ENSTSYP00000005913	ENSTSYP00000020533	Complement component C1q receptor.	Platelet endothelial cell adhesion molecule.	0.640
CD93	PTPRB	ENSTSYP00000005913	ENSTSYP00000016845	Complement component C1q receptor.	Receptor-type tyrosine-protein phosphatase beta isoform X1.	0.455