11 items (Carlito syrichta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRUB1	Probable tRNA pseudouridine synthase 1 isoform X1. (351 aa)
	NAF1	H/ACA ribonucleoprotein complex non-core subunit NAF1. (433 aa)
	DKC1	H/ACA ribonucleoprotein complex subunit 4. (524 aa)
	NHP2	H/ACA ribonucleoprotein complex subunit 2. (131 aa)
	NOLC1	LOW QUALITY PROTEIN: nucleolar and coiled-body phosphoprotein 1. (667 aa)
	GAR1	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (212 aa)
	SHQ1	Protein SHQ1 homolog isoform X1. (559 aa)
	NOP10	H/ACA ribonucleoprotein complex subunit 3. (64 aa)
	WRAP53	Telomerase Cajal body protein 1. (539 aa)
	TRUB2	Probable tRNA pseudouridine synthase 2 isoform X1. (331 aa)
	ENSTSYP00000024325	annotation not available (196 aa)

Your Current Organism:

Carlito syrichta

NCBI taxonomy Id: 1868482
Other names: C. syrichta, Philippine tarsier, Tarsius syrichta

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DKC1	ENSTSYP00000024325	ENSTSYP00000007048	ENSTSYP00000024325	H/ACA ribonucleoprotein complex subunit 4.	annotation not available	0.998
DKC1	GAR1	ENSTSYP00000007048	ENSTSYP00000012538	H/ACA ribonucleoprotein complex subunit 4.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.998
DKC1	NAF1	ENSTSYP00000007048	ENSTSYP00000005441	H/ACA ribonucleoprotein complex subunit 4.	H/ACA ribonucleoprotein complex non-core subunit NAF1.	0.995
DKC1	NHP2	ENSTSYP00000007048	ENSTSYP00000007456	H/ACA ribonucleoprotein complex subunit 4.	H/ACA ribonucleoprotein complex subunit 2.	0.999
DKC1	NOLC1	ENSTSYP00000007048	ENSTSYP00000010385	H/ACA ribonucleoprotein complex subunit 4.	LOW QUALITY PROTEIN: nucleolar and coiled-body phosphoprotein 1.	0.990
DKC1	NOP10	ENSTSYP00000007048	ENSTSYP00000014100	H/ACA ribonucleoprotein complex subunit 4.	H/ACA ribonucleoprotein complex subunit 3.	0.999
DKC1	SHQ1	ENSTSYP00000007048	ENSTSYP00000013253	H/ACA ribonucleoprotein complex subunit 4.	Protein SHQ1 homolog isoform X1.	0.999
DKC1	TRUB1	ENSTSYP00000007048	ENSTSYP00000000410	H/ACA ribonucleoprotein complex subunit 4.	Probable tRNA pseudouridine synthase 1 isoform X1.	0.543
DKC1	TRUB2	ENSTSYP00000007048	ENSTSYP00000022845	H/ACA ribonucleoprotein complex subunit 4.	Probable tRNA pseudouridine synthase 2 isoform X1.	0.552
DKC1	WRAP53	ENSTSYP00000007048	ENSTSYP00000020592	H/ACA ribonucleoprotein complex subunit 4.	Telomerase Cajal body protein 1.	0.995
ENSTSYP00000024325	DKC1	ENSTSYP00000024325	ENSTSYP00000007048	annotation not available	H/ACA ribonucleoprotein complex subunit 4.	0.998
ENSTSYP00000024325	NAF1	ENSTSYP00000024325	ENSTSYP00000005441	annotation not available	H/ACA ribonucleoprotein complex non-core subunit NAF1.	0.802
ENSTSYP00000024325	NHP2	ENSTSYP00000024325	ENSTSYP00000007456	annotation not available	H/ACA ribonucleoprotein complex subunit 2.	0.998
ENSTSYP00000024325	NOLC1	ENSTSYP00000024325	ENSTSYP00000010385	annotation not available	LOW QUALITY PROTEIN: nucleolar and coiled-body phosphoprotein 1.	0.877
ENSTSYP00000024325	NOP10	ENSTSYP00000024325	ENSTSYP00000014100	annotation not available	H/ACA ribonucleoprotein complex subunit 3.	0.993
ENSTSYP00000024325	SHQ1	ENSTSYP00000024325	ENSTSYP00000013253	annotation not available	Protein SHQ1 homolog isoform X1.	0.959
ENSTSYP00000024325	TRUB1	ENSTSYP00000024325	ENSTSYP00000000410	annotation not available	Probable tRNA pseudouridine synthase 1 isoform X1.	0.991
ENSTSYP00000024325	TRUB2	ENSTSYP00000024325	ENSTSYP00000022845	annotation not available	Probable tRNA pseudouridine synthase 2 isoform X1.	0.980
ENSTSYP00000024325	WRAP53	ENSTSYP00000024325	ENSTSYP00000020592	annotation not available	Telomerase Cajal body protein 1.	0.981
GAR1	DKC1	ENSTSYP00000012538	ENSTSYP00000007048	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	H/ACA ribonucleoprotein complex subunit 4.	0.998