21 items (Carlito syrichta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSTSYP00000021130	annotation not available (102 aa)
	SF3B1	Splicing factor 3B subunit 1 isoform X2. (1306 aa)
	ENSTSYP00000034478	annotation not available (240 aa)
	LOC103249566	U1 small nuclear ribonucleoprotein 70 kDa isoform X3. (124 aa)
	SNRPB	Small nuclear ribonucleoprotein-associated protein. (329 aa)
	SNRPG-2	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (77 aa)
	LOC103255522	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2. (391 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (49 aa)
	ENSTSYP00000025173	annotation not available (199 aa)
	SF3A2	Splicing factor 3A subunit 2. (183 aa)
	SF3A1	Splicing factor 3A subunit 1. (793 aa)
	LUC7L	Putative RNA-binding protein Luc7-like 1 isoform X1. (371 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
	PRPF40A	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A. (929 aa)
	PRPF40B	pre-mRNA-processing factor 40 homolog B isoform X2. (894 aa)
	SNRPG	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (63 aa)
	ENSTSYP00000015083	annotation not available (188 aa)
	PRPF39	pre-mRNA-processing factor 39 isoform X1. (668 aa)
	ENSTSYP00000017573	annotation not available (140 aa)
	U2AF2	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (475 aa)
	ENSTSYP00000020728	annotation not available (68 aa)

Your Current Organism:

Carlito syrichta

NCBI taxonomy Id: 1868482
Other names: C. syrichta, Philippine tarsier, Tarsius syrichta

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTSYP00000015083	ENSTSYP00000020728	ENSTSYP00000015083	ENSTSYP00000020728	annotation not available	annotation not available	0.910
ENSTSYP00000015083	ENSTSYP00000034478	ENSTSYP00000015083	ENSTSYP00000034478	annotation not available	annotation not available	0.502
ENSTSYP00000015083	LOC103249566	ENSTSYP00000015083	ENSTSYP00000032213	annotation not available	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	0.963
ENSTSYP00000015083	LOC103255522	ENSTSYP00000015083	ENSTSYP00000028406	annotation not available	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	0.844
ENSTSYP00000015083	LSM7	ENSTSYP00000015083	ENSTSYP00000028284	annotation not available	U6 snRNA-associated Sm-like protein LSm7.	0.851
ENSTSYP00000015083	LUC7L	ENSTSYP00000015083	ENSTSYP00000009791	annotation not available	Putative RNA-binding protein Luc7-like 1 isoform X1.	0.844
ENSTSYP00000015083	PRPF39	ENSTSYP00000015083	ENSTSYP00000017492	annotation not available	pre-mRNA-processing factor 39 isoform X1.	0.872
ENSTSYP00000015083	PRPF40B	ENSTSYP00000015083	ENSTSYP00000012505	annotation not available	pre-mRNA-processing factor 40 homolog B isoform X2.	0.847
ENSTSYP00000015083	SF3A1	ENSTSYP00000015083	ENSTSYP00000004339	annotation not available	Splicing factor 3A subunit 1.	0.779
ENSTSYP00000015083	SF3A2	ENSTSYP00000015083	ENSTSYP00000023249	annotation not available	Splicing factor 3A subunit 2.	0.896
ENSTSYP00000015083	SF3B1	ENSTSYP00000015083	ENSTSYP00000034534	annotation not available	Splicing factor 3B subunit 1 isoform X2.	0.965
ENSTSYP00000015083	SNRPB	ENSTSYP00000015083	ENSTSYP00000031979	annotation not available	Small nuclear ribonucleoprotein-associated protein.	0.502
ENSTSYP00000015083	SNRPG	ENSTSYP00000015083	ENSTSYP00000013831	annotation not available	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.	0.910
ENSTSYP00000015083	SNRPG-2	ENSTSYP00000015083	ENSTSYP00000029770	annotation not available	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.	0.910
ENSTSYP00000015083	U2AF2	ENSTSYP00000015083	ENSTSYP00000017949	annotation not available	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.755
ENSTSYP00000017573	ENSTSYP00000020728	ENSTSYP00000017573	ENSTSYP00000020728	annotation not available	annotation not available	0.916
ENSTSYP00000017573	ENSTSYP00000034478	ENSTSYP00000017573	ENSTSYP00000034478	annotation not available	annotation not available	0.511
ENSTSYP00000017573	LOC103249566	ENSTSYP00000017573	ENSTSYP00000032213	annotation not available	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	0.978
ENSTSYP00000017573	LOC103255522	ENSTSYP00000017573	ENSTSYP00000028406	annotation not available	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	0.844
ENSTSYP00000017573	LSM7	ENSTSYP00000017573	ENSTSYP00000028284	annotation not available	U6 snRNA-associated Sm-like protein LSm7.	0.872