16 items (Carlito syrichta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MAD2L2	Mitotic spindle assembly checkpoint protein MAD2B. (223 aa)
	ZNF593	Zinc finger protein 593. (106 aa)
	PSEN1	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (467 aa)
	GATA1	Erythroid transcription factor. (413 aa)
	DDIT3	DNA damage-inducible transcript 3 protein. (184 aa)
	SIN3A	Paired amphipathic helix protein Sin3a. (1274 aa)
	PER2	Period circadian protein homolog 2. (1254 aa)
	ANKRD33B	Ankyrin repeat domain-containing protein 33B. (495 aa)
	LHX2	LIM homeobox 2. (369 aa)
	ANKRD33	Ankyrin repeat domain-containing protein 33. (244 aa)
	FBXW7	F-box/WD repeat-containing protein 7 isoform X1. (708 aa)
	REST	RE1-silencing transcription factor. (339 aa)
	FBXW9	F-box/WD repeat-containing protein 9. (458 aa)
	HEY1	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2. (304 aa)
	ENSTSYP00000028129	annotation not available (195 aa)
	SRI	Sorcin. (198 aa)

Your Current Organism:

Carlito syrichta

NCBI taxonomy Id: 1868482
Other names: C. syrichta, Philippine tarsier, Tarsius syrichta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDIT3	FBXW7	ENSTSYP00000004753	ENSTSYP00000022742	DNA damage-inducible transcript 3 protein.	F-box/WD repeat-containing protein 7 isoform X1.	0.403
DDIT3	FBXW9	ENSTSYP00000004753	ENSTSYP00000025914	DNA damage-inducible transcript 3 protein.	F-box/WD repeat-containing protein 9.	0.403
DDIT3	PER2	ENSTSYP00000004753	ENSTSYP00000012476	DNA damage-inducible transcript 3 protein.	Period circadian protein homolog 2.	0.616
FBXW7	DDIT3	ENSTSYP00000022742	ENSTSYP00000004753	F-box/WD repeat-containing protein 7 isoform X1.	DNA damage-inducible transcript 3 protein.	0.403
FBXW9	DDIT3	ENSTSYP00000025914	ENSTSYP00000004753	F-box/WD repeat-containing protein 9.	DNA damage-inducible transcript 3 protein.	0.403
GATA1	LHX2	ENSTSYP00000003365	ENSTSYP00000019424	Erythroid transcription factor.	LIM homeobox 2.	0.552
GATA1	SIN3A	ENSTSYP00000003365	ENSTSYP00000005377	Erythroid transcription factor.	Paired amphipathic helix protein Sin3a.	0.633
HEY1	PER2	ENSTSYP00000027040	ENSTSYP00000012476	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2.	Period circadian protein homolog 2.	0.567
HEY1	SIN3A	ENSTSYP00000027040	ENSTSYP00000005377	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2.	Paired amphipathic helix protein Sin3a.	0.404
LHX2	GATA1	ENSTSYP00000019424	ENSTSYP00000003365	LIM homeobox 2.	Erythroid transcription factor.	0.552
PER2	DDIT3	ENSTSYP00000012476	ENSTSYP00000004753	Period circadian protein homolog 2.	DNA damage-inducible transcript 3 protein.	0.616
PER2	HEY1	ENSTSYP00000012476	ENSTSYP00000027040	Period circadian protein homolog 2.	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2.	0.567
REST	SIN3A	ENSTSYP00000024424	ENSTSYP00000005377	RE1-silencing transcription factor.	Paired amphipathic helix protein Sin3a.	0.983
SIN3A	GATA1	ENSTSYP00000005377	ENSTSYP00000003365	Paired amphipathic helix protein Sin3a.	Erythroid transcription factor.	0.633
SIN3A	HEY1	ENSTSYP00000005377	ENSTSYP00000027040	Paired amphipathic helix protein Sin3a.	Hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2.	0.404
SIN3A	REST	ENSTSYP00000005377	ENSTSYP00000024424	Paired amphipathic helix protein Sin3a.	RE1-silencing transcription factor.	0.983