10 items (Carlito syrichta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LUC7L3	Luc7-like protein 3 isoform X1. (473 aa)
	SF3A1	Splicing factor 3A subunit 1. (793 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	LUC7L	Putative RNA-binding protein Luc7-like 1 isoform X1. (371 aa)
	PRPF40A	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A. (929 aa)
	SF3A2	Splicing factor 3A subunit 2. (183 aa)
	LOC103255522	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2. (391 aa)
	SNRPB	Small nuclear ribonucleoprotein-associated protein. (329 aa)
	LOC103249566	U1 small nuclear ribonucleoprotein 70 kDa isoform X3. (124 aa)
	ENSTSYP00000034478	annotation not available (240 aa)

Your Current Organism:

Carlito syrichta

NCBI taxonomy Id: 1868482
Other names: C. syrichta, Philippine tarsier, Tarsius syrichta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTSYP00000034478	LOC103249566	ENSTSYP00000034478	ENSTSYP00000032213	annotation not available	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	0.848
ENSTSYP00000034478	SF3A1	ENSTSYP00000034478	ENSTSYP00000004339	annotation not available	Splicing factor 3A subunit 1.	0.519
LOC103249566	ENSTSYP00000034478	ENSTSYP00000032213	ENSTSYP00000034478	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	annotation not available	0.848
LOC103249566	LOC103255522	ENSTSYP00000032213	ENSTSYP00000028406	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	0.940
LOC103249566	LUC7L	ENSTSYP00000032213	ENSTSYP00000009791	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	Putative RNA-binding protein Luc7-like 1 isoform X1.	0.940
LOC103249566	LUC7L3	ENSTSYP00000032213	ENSTSYP00000001017	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	Luc7-like protein 3 isoform X1.	0.918
LOC103249566	PRPF40A	ENSTSYP00000032213	ENSTSYP00000011342	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A.	0.702
LOC103249566	SF3A1	ENSTSYP00000032213	ENSTSYP00000004339	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	Splicing factor 3A subunit 1.	0.794
LOC103249566	SF3A2	ENSTSYP00000032213	ENSTSYP00000023249	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	Splicing factor 3A subunit 2.	0.944
LOC103249566	SNRPB	ENSTSYP00000032213	ENSTSYP00000031979	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	Small nuclear ribonucleoprotein-associated protein.	0.848
LOC103249566	SNRPN	ENSTSYP00000032213	ENSTSYP00000004788	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	Small nuclear ribonucleoprotein-associated protein.	0.976
LOC103255522	LOC103249566	ENSTSYP00000028406	ENSTSYP00000032213	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	0.940
LOC103255522	LUC7L3	ENSTSYP00000028406	ENSTSYP00000001017	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	Luc7-like protein 3 isoform X1.	0.616
LOC103255522	PRPF40A	ENSTSYP00000028406	ENSTSYP00000011342	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A.	0.684
LOC103255522	SF3A1	ENSTSYP00000028406	ENSTSYP00000004339	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	Splicing factor 3A subunit 1.	0.776
LOC103255522	SF3A2	ENSTSYP00000028406	ENSTSYP00000023249	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	Splicing factor 3A subunit 2.	0.767
LOC103255522	SNRPN	ENSTSYP00000028406	ENSTSYP00000004788	LOW QUALITY PROTEIN: putative RNA-binding protein Luc7-like 2.	Small nuclear ribonucleoprotein-associated protein.	0.952
LUC7L	LOC103249566	ENSTSYP00000009791	ENSTSYP00000032213	Putative RNA-binding protein Luc7-like 1 isoform X1.	U1 small nuclear ribonucleoprotein 70 kDa isoform X3.	0.940
LUC7L	LUC7L3	ENSTSYP00000009791	ENSTSYP00000001017	Putative RNA-binding protein Luc7-like 1 isoform X1.	Luc7-like protein 3 isoform X1.	0.616
LUC7L	PRPF40A	ENSTSYP00000009791	ENSTSYP00000011342	Putative RNA-binding protein Luc7-like 1 isoform X1.	LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A.	0.684