(6 nodes) TB domain network (Carlito syrichta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FBN2	Fibrillin-2. (2912 aa)
	FST	Follistatin. (349 aa)
	LTBP2	Latent-transforming growth factor beta-binding protein 2. (1622 aa)
	FBN3	Fibrillin-3. (2244 aa)
	LTBP1	Latent-transforming growth factor beta-binding protein 1. (1011 aa)
	LTBP4	Latent-transforming growth factor beta-binding protein 4. (1507 aa)

Your Current Organism:

Carlito syrichta

NCBI taxonomy Id: 1868482
Other names: C. syrichta, Philippine tarsier, Tarsius syrichta

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LTBP1	LTBP2	ENSTSYP00000012726	ENSTSYP00000018216	Latent-transforming growth factor beta-binding protein 1.	Latent-transforming growth factor beta-binding protein 2.	0.506
LTBP1	LTBP4	ENSTSYP00000012726	ENSTSYP00000025018	Latent-transforming growth factor beta-binding protein 1.	Latent-transforming growth factor beta-binding protein 4.	0.435
LTBP2	LTBP1	ENSTSYP00000018216	ENSTSYP00000012726	Latent-transforming growth factor beta-binding protein 2.	Latent-transforming growth factor beta-binding protein 1.	0.506
LTBP2	LTBP4	ENSTSYP00000018216	ENSTSYP00000025018	Latent-transforming growth factor beta-binding protein 2.	Latent-transforming growth factor beta-binding protein 4.	0.453
LTBP4	LTBP1	ENSTSYP00000025018	ENSTSYP00000012726	Latent-transforming growth factor beta-binding protein 4.	Latent-transforming growth factor beta-binding protein 1.	0.435
LTBP4	LTBP2	ENSTSYP00000025018	ENSTSYP00000018216	Latent-transforming growth factor beta-binding protein 4.	Latent-transforming growth factor beta-binding protein 2.	0.453