(7 nodes) RNA polymerase, and Transcription termination network (Humibacillus sp. DSM 29435)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nusA	Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination. (340 aa)
	rpoZ	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (87 aa)
	rpoA	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (341 aa)
	rpoC	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1298 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1160 aa)
	rplK	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (144 aa)
	nusG	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination. (269 aa)

Your Current Organism:

Humibacillus sp. DSM 29435

NCBI taxonomy Id: 1869167
Other names: H. sp. DSM 29435

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
nusA	nusG	BA895_03175	BA895_18560	Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	0.993
nusA	rplK	BA895_03175	BA895_18555	Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.987
nusA	rpoA	BA895_03175	BA895_18245	Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
nusA	rpoB	BA895_03175	BA895_18470	Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.992
nusA	rpoC	BA895_03175	BA895_18465	Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
nusA	rpoZ	BA895_03175	BA895_14655	Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.979
nusG	nusA	BA895_18560	BA895_03175	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.	0.993
nusG	rplK	BA895_18560	BA895_18555	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.999
nusG	rpoA	BA895_18560	BA895_18245	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
nusG	rpoB	BA895_18560	BA895_18470	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
nusG	rpoC	BA895_18560	BA895_18465	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.992
nusG	rpoZ	BA895_18560	BA895_14655	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.952
rplK	nusA	BA895_18555	BA895_03175	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.	0.987
rplK	nusG	BA895_18555	BA895_18560	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	0.999
rplK	rpoA	BA895_18555	BA895_18245	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
rplK	rpoB	BA895_18555	BA895_18470	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rplK	rpoC	BA895_18555	BA895_18465	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
rplK	rpoZ	BA895_18555	BA895_14655	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.985
rpoA	nusA	BA895_18245	BA895_03175	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.	0.994
rpoA	nusG	BA895_18245	BA895_18560	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	0.994