(29 nodes) Carbohydrate import across plasma membrane, and Glycoside hydrolase family 31 network (Sneathia amnii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKC95166.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AKC95350.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	xylA	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (435 aa)
	xylB	Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	AKC95353.1	Family 31 glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family. (693 aa)
	AKC95354.1	Glycosyl hydrolase family 31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family. (679 aa)
	AKC95355.1	PTS mannose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
	AKC95356.1	PTS N-acetylgalactosamine transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	AKC95357.1	PTS fructose transporter subunit IID; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	AKC95358.1	PTS N-acetylglucosamine transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	AKC95359.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family. (794 aa)
	AKC95360.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AKC95361.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	AKC95362.1	PTS sorbose-specific transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	AKC95363.1	PTS system mannose/fructose/sorbose family transporter subunit IID; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AKC95364.1	PTS mannose transporter subunit IIAB; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	AKC95365.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (622 aa)
	AKC95921.1	Glucosamine-fructose-6-phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	AKC95922.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AKC95923.1	PTS mannose transporter subunit IID; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AKC95924.1	PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	AKC95925.1	PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
	AKC95926.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	AKC95927.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	AKC95928.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (532 aa)
	AKC96094.1	PTS system mannost-specific transporter subunits IIAB; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AKC96095.1	PTS mannose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	AKC96096.1	PTS system mannose family transporter subunit IID; Hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	AKC96097.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)

Your Current Organism:

Sneathia amnii

NCBI taxonomy Id: 187101
Other names: Leptotrichia amnionii, S. amnii, Sneathia sp. Sn35, cf. Leptotrichia sp. AMN-1, strain Sn35

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKC95166.1	AKC95356.1	VC03_01015	VC03_02170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS N-acetylgalactosamine transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AKC95166.1	AKC95357.1	VC03_01015	VC03_02175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS fructose transporter subunit IID; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AKC95166.1	AKC95362.1	VC03_01015	VC03_02200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS sorbose-specific transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AKC95166.1	AKC96094.1	VC03_01015	VC03_06440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS system mannost-specific transporter subunits IIAB; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
AKC95166.1	AKC96095.1	VC03_01015	VC03_06445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS mannose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AKC95166.1	AKC96096.1	VC03_01015	VC03_06450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS system mannose family transporter subunit IID; Hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AKC95166.1	AKC96097.1	VC03_01015	VC03_06455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
AKC95350.1	AKC95353.1	VC03_02140	VC03_02155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 31 glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	0.595
AKC95350.1	AKC95354.1	VC03_02140	VC03_02160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	0.564
AKC95350.1	AKC95355.1	VC03_02140	VC03_02165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS mannose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
AKC95350.1	AKC95356.1	VC03_02140	VC03_02170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS N-acetylgalactosamine transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
AKC95350.1	AKC95357.1	VC03_02140	VC03_02175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS fructose transporter subunit IID; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
AKC95350.1	AKC95358.1	VC03_02140	VC03_02180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS N-acetylglucosamine transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
AKC95350.1	AKC95359.1	VC03_02140	VC03_02185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	0.469
AKC95350.1	xylA	VC03_02140	VC03_02145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family.	0.674
AKC95350.1	xylB	VC03_02140	VC03_02150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
AKC95353.1	AKC95350.1	VC03_02155	VC03_02140	Family 31 glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595
AKC95353.1	AKC95354.1	VC03_02155	VC03_02160	Family 31 glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	Glycosyl hydrolase family 31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	0.748
AKC95353.1	AKC95355.1	VC03_02155	VC03_02165	Family 31 glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	PTS mannose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
AKC95353.1	AKC95356.1	VC03_02155	VC03_02170	Family 31 glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	PTS N-acetylgalactosamine transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649