(17 nodes) MetI-like superfamily network (Sneathia amnii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKC96002.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	AKC96171.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
	AKC95275.1	Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	AKC95287.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	AKC95288.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AKC95323.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AKC95324.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AKC95100.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AKC95101.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AKC95197.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AKC95215.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
	AKC95749.1	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	AKC95877.1	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	AKC95916.1	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (283 aa)
	AKC95917.1	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AKC95951.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AKC95952.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)

Your Current Organism:

Sneathia amnii

NCBI taxonomy Id: 187101
Other names: Leptotrichia amnionii, S. amnii, Sneathia sp. Sn35, cf. Leptotrichia sp. AMN-1, strain Sn35

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKC95100.1	AKC95101.1	VC03_00645	VC03_00650	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AKC95100.1	AKC95215.1	VC03_00645	VC03_01325	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AKC95100.1	AKC95287.1	VC03_00645	VC03_01730	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AKC95100.1	AKC95288.1	VC03_00645	VC03_01735	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AKC95100.1	AKC95952.1	VC03_00645	VC03_05620	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
AKC95101.1	AKC95100.1	VC03_00650	VC03_00645	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AKC95101.1	AKC95287.1	VC03_00650	VC03_01730	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AKC95101.1	AKC95288.1	VC03_00650	VC03_01735	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AKC95101.1	AKC95951.1	VC03_00650	VC03_05615	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AKC95215.1	AKC95100.1	VC03_01325	VC03_00645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AKC95215.1	AKC95287.1	VC03_01325	VC03_01730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AKC95215.1	AKC95917.1	VC03_01325	VC03_05425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AKC95215.1	AKC95951.1	VC03_01325	VC03_05615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AKC95215.1	AKC96171.1	VC03_01325	VC03_05895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AKC95287.1	AKC95100.1	VC03_01730	VC03_00645	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AKC95287.1	AKC95101.1	VC03_01730	VC03_00650	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AKC95287.1	AKC95215.1	VC03_01730	VC03_01325	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AKC95287.1	AKC95288.1	VC03_01730	VC03_01735	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AKC95287.1	AKC95952.1	VC03_01730	VC03_05620	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
AKC95288.1	AKC95100.1	VC03_01735	VC03_00645	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976