(53 nodes) Mixed, incl. Molybdopterin oxidoreductase, and 4Fe-4S ferredoxin, iron-sulphur binding, conserved site network (Halodesulfurarchaeum formicicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HSR6_0289	NAD(P)H-nitrite reductase. (421 aa)
	HSR6_0405	Hypothetical protein. (79 aa)
	HSR6_0406	Bacterio-opsin activator HTH domain-containing protein. (187 aa)
	HSR6_0407	4Fe-4S ferredoxin iron-sulfur binding domain protein. (83 aa)
	HSR6_0408	Dimethylsulfoxide reductase. (832 aa)
	HSR6_0409	Molybdopterin oxidoreductase. (246 aa)
	HSR6_0410	Polysulfide reductase NrfD. (449 aa)
	HSR6_0411	Chaperone protein TorD. (175 aa)
	HSR6_0412	Ion transporter. (279 aa)
	HSR6_0413	Zinc/iron permease. (227 aa)
	HSR6_0414	Hypothetical protein. (446 aa)
	HSR6_0498	Chaperone protein TorD. (181 aa)
	HSR6_0499	Polysulfide reductase NrfD. (435 aa)
	HSR6_0500	4Fe-4S ferredoxin iron-sulfur binding domain protein. (252 aa)
	HSR6_0501	Dimethylsulfoxide reductase. (823 aa)
	HSR6_0502	Hypothetical protein. (82 aa)
	HSR6_0503	Hypothetical protein. (87 aa)
	HSR6_0504	Bacterio-opsin activator HTH domain-containing protein. (216 aa)
	HSR6_1414	NAD-dependent epimerase/dehydratase. (329 aa)
	HSR6_1415	Transcriptional regulator. (202 aa)
	HSR6_1416	Chaperone protein TorD. (221 aa)
	HSR6_1417	Polysulfide reductase NrfD. (380 aa)
	HSR6_1418	4Fe-4S ferredoxin iron-sulfur binding domain protein. (221 aa)
	HSR6_1419	Molybdopterin oxidoreductase. (713 aa)
	HSR6_1592	Chaperone protein TorD. (221 aa)
	HSR6_1593	Molybdopterin oxidoreductase. (1121 aa)
	HSR6_1594	Polysulfide reductase NrfD. (423 aa)
	HSR6_1595	4Fe-4S ferredoxin iron-sulfur binding domain protein. (356 aa)
	HSR6_1596	Bacterio-opsin activator HTH domain-containing protein. (623 aa)
	HSR6_1625	Hypothetical protein. (330 aa)
	HSR6_1626	4Fe-4S ferredoxin. (363 aa)
	HSR6_1627	Polysulfide reductase NrfD. (331 aa)
	HSR6_1640	Iron-sulfur binding protein, ferredoxin-like protein. (658 aa)
	HSR6_1641	Molecular chaperone TorD. (197 aa)
	HSR6_1642	Cytochrome b subunit of formate dehydrogenase. (307 aa)
	HSR6_1643	Hypothetical protein. (95 aa)
	fdoH	Formate dehydrogenase iron-sulfur subunit. (184 aa)
	fdoG	Formate dehydrogenase major subunit. (981 aa)
	HSR6_1646	Hypothetical protein. (791 aa)
	rimI	Ribosomal-protein-alanine N-acetyltransferase. (150 aa)
	HSR6_1649	Hypothetical protein. (140 aa)
	HSR6_1724	Hypothetical protein. (56 aa)
	HSR6_1725	Anaerobic dehydrogenase subunit. (229 aa)
	HSR6_1726	Cytochrome b subunit of formate dehydrogenase. (316 aa)
	HSR6_1727	Hypothetical protein. (105 aa)
	dmsB	Anaerobic dimethyl sulfoxide reductase subunit B (DMSO reductase iron- sulfur subunit). (200 aa)
	HSR6_1729	Molybdopterin oxidoreductase. (768 aa)
	HSR6_1730	4Fe-4S ferredoxin. (79 aa)
	HSR6_1731	Bacterio-opsin activator HTH domain-containing protein. (203 aa)
	fdoG2	Formate dehydrogenase major subunit. (681 aa)
	HSR6_1803	Hypothetical protein. (133 aa)
	fdoG3	Formate dehydrogenase major subunit. (690 aa)
	HSR6_1807	Hypothetical protein. (109 aa)

Your Current Organism:

Halodesulfurarchaeum formicicum

NCBI taxonomy Id: 1873524
Other names: H. formicicum, Halobacteriaceae archaeon Bari-SA6, Halobacteriaceae archaeon HSR14, Halobacteriaceae archaeon HSR15, Halobacteriaceae archaeon HSR8, Halobacteriaceae archaeon HSR9, Halobacteriaceae archaeon Medee-SA6, Halodesulfurarchaeum formicicum Sorokin et al. 2017, JCM 30662, UNIQEM U983, haloarchaeon HSR6, haloarchaeon HTSR1, strain HSR6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HSR6_0289	fdoG2	HSR6_0289	HSR6_1802	NAD(P)H-nitrite reductase.	Formate dehydrogenase major subunit.	0.853
HSR6_0289	fdoG3	HSR6_0289	HSR6_1806	NAD(P)H-nitrite reductase.	Formate dehydrogenase major subunit.	0.861
HSR6_0405	HSR6_0406	HSR6_0405	HSR6_0406	Hypothetical protein.	Bacterio-opsin activator HTH domain-containing protein.	0.470
HSR6_0406	HSR6_0405	HSR6_0406	HSR6_0405	Bacterio-opsin activator HTH domain-containing protein.	Hypothetical protein.	0.470
HSR6_0406	HSR6_0407	HSR6_0406	HSR6_0407	Bacterio-opsin activator HTH domain-containing protein.	4Fe-4S ferredoxin iron-sulfur binding domain protein.	0.484
HSR6_0406	HSR6_0408	HSR6_0406	HSR6_0408	Bacterio-opsin activator HTH domain-containing protein.	Dimethylsulfoxide reductase.	0.484
HSR6_0406	HSR6_0409	HSR6_0406	HSR6_0409	Bacterio-opsin activator HTH domain-containing protein.	Molybdopterin oxidoreductase.	0.464
HSR6_0406	HSR6_0410	HSR6_0406	HSR6_0410	Bacterio-opsin activator HTH domain-containing protein.	Polysulfide reductase NrfD.	0.464
HSR6_0406	HSR6_0411	HSR6_0406	HSR6_0411	Bacterio-opsin activator HTH domain-containing protein.	Chaperone protein TorD.	0.464
HSR6_0407	HSR6_0406	HSR6_0407	HSR6_0406	4Fe-4S ferredoxin iron-sulfur binding domain protein.	Bacterio-opsin activator HTH domain-containing protein.	0.484
HSR6_0407	HSR6_0408	HSR6_0407	HSR6_0408	4Fe-4S ferredoxin iron-sulfur binding domain protein.	Dimethylsulfoxide reductase.	0.773
HSR6_0407	HSR6_0409	HSR6_0407	HSR6_0409	4Fe-4S ferredoxin iron-sulfur binding domain protein.	Molybdopterin oxidoreductase.	0.737
HSR6_0407	HSR6_0410	HSR6_0407	HSR6_0410	4Fe-4S ferredoxin iron-sulfur binding domain protein.	Polysulfide reductase NrfD.	0.740
HSR6_0407	HSR6_0411	HSR6_0407	HSR6_0411	4Fe-4S ferredoxin iron-sulfur binding domain protein.	Chaperone protein TorD.	0.740
HSR6_0407	HSR6_0412	HSR6_0407	HSR6_0412	4Fe-4S ferredoxin iron-sulfur binding domain protein.	Ion transporter.	0.485
HSR6_0408	HSR6_0406	HSR6_0408	HSR6_0406	Dimethylsulfoxide reductase.	Bacterio-opsin activator HTH domain-containing protein.	0.484
HSR6_0408	HSR6_0407	HSR6_0408	HSR6_0407	Dimethylsulfoxide reductase.	4Fe-4S ferredoxin iron-sulfur binding domain protein.	0.773
HSR6_0408	HSR6_0409	HSR6_0408	HSR6_0409	Dimethylsulfoxide reductase.	Molybdopterin oxidoreductase.	0.927
HSR6_0408	HSR6_0410	HSR6_0408	HSR6_0410	Dimethylsulfoxide reductase.	Polysulfide reductase NrfD.	0.945
HSR6_0408	HSR6_0411	HSR6_0408	HSR6_0411	Dimethylsulfoxide reductase.	Chaperone protein TorD.	0.874

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