(10 nodes) Mixed, incl. Dienelactone hydrolase family, and HNH nucleases network (Thalassolituus oleivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APR65589.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (775 aa)
	APR65883.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (683 aa)
	APR65884.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (4605 aa)
	APR65903.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (403 aa)
	APR66036.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
	APR66597.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	APR66967.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (293 aa)
	APR66971.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	APR67010.1	Triacylglycerol lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (597 aa)
	APR67521.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (303 aa)

Your Current Organism:

Thalassolituus oleivorans

NCBI taxonomy Id: 187493
Other names: DSM 14913, LMG 21420, LMG:21420, T. oleivorans, Thalassolituus oleivorans Yakimov et al. 2004, strain MIL-1

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APR65589.1	APR65883.1	CN03_00850	CN03_02455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
APR65589.1	APR65884.1	CN03_00850	CN03_02460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
APR65589.1	APR65903.1	CN03_00850	CN03_02560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
APR65589.1	APR66036.1	CN03_00850	CN03_03290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APR65589.1	APR66597.1	CN03_00850	CN03_06390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
APR65589.1	APR66967.1	CN03_00850	CN03_08480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.737
APR65589.1	APR66971.1	CN03_00850	CN03_08500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
APR65589.1	APR67010.1	CN03_00850	CN03_08730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Triacylglycerol lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
APR65589.1	APR67521.1	CN03_00850	CN03_11600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.685
APR65883.1	APR65589.1	CN03_02455	CN03_00850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.662
APR65883.1	APR65884.1	CN03_02455	CN03_02460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
APR65883.1	APR65903.1	CN03_02455	CN03_02560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.459
APR65883.1	APR66036.1	CN03_02455	CN03_03290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
APR65883.1	APR66597.1	CN03_02455	CN03_06390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
APR65883.1	APR66971.1	CN03_02455	CN03_08500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
APR65883.1	APR67521.1	CN03_02455	CN03_11600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.568
APR65884.1	APR65589.1	CN03_02460	CN03_00850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.813
APR65884.1	APR65883.1	CN03_02460	CN03_02455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
APR65884.1	APR65903.1	CN03_02460	CN03_02560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.746
APR65884.1	APR66036.1	CN03_02460	CN03_03290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739