(10 nodes) Mixed, incl. ATP-dependent RNA helicase DEAD-box, conserved site, and Noc1p-Noc2p complex network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XJJ0	DEAD-domain-containing protein. (688 aa)
	A0A317XLM4	RNA-binding domain-containing protein. (1077 aa)
	A0A317XLV5	RRM domain-containing protein. (766 aa)
	A0A317XNL9	ARM repeat-containing protein. (945 aa)
	A0A317XQC2	DEAD-domain-containing protein. (902 aa)
	A0A317XQY9	Putative DBP3-putative RNA helicase required for pre-rRNA processing; Belongs to the DEAD box helicase family. (560 aa)
	A0A317XTF1	CBF-domain-containing protein. (1204 aa)
	A0A317XTJ6	RNA helicase. (1005 aa)
	A0A317XUD7	RNA-binding domain-containing protein. (932 aa)
	A0A317XWY0	P-loop containing nucleoside triphosphate hydrolase protein. (947 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XJJ0	A0A317XLM4	DEAD-domain-containing protein.	RNA-binding domain-containing protein.	0.941
A0A317XJJ0	A0A317XLV5	DEAD-domain-containing protein.	RRM domain-containing protein.	0.951
A0A317XJJ0	A0A317XNL9	DEAD-domain-containing protein.	ARM repeat-containing protein.	0.884
A0A317XJJ0	A0A317XQC2	DEAD-domain-containing protein.	DEAD-domain-containing protein.	0.888
A0A317XJJ0	A0A317XQY9	DEAD-domain-containing protein.	Putative DBP3-putative RNA helicase required for pre-rRNA processing; Belongs to the DEAD box helicase family.	0.890
A0A317XJJ0	A0A317XTF1	DEAD-domain-containing protein.	CBF-domain-containing protein.	0.982
A0A317XJJ0	A0A317XTJ6	DEAD-domain-containing protein.	RNA helicase.	0.889
A0A317XJJ0	A0A317XUD7	DEAD-domain-containing protein.	RNA-binding domain-containing protein.	0.922
A0A317XJJ0	A0A317XWY0	DEAD-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.947
A0A317XLM4	A0A317XJJ0	RNA-binding domain-containing protein.	DEAD-domain-containing protein.	0.941
A0A317XLM4	A0A317XLV5	RNA-binding domain-containing protein.	RRM domain-containing protein.	0.968
A0A317XLM4	A0A317XNL9	RNA-binding domain-containing protein.	ARM repeat-containing protein.	0.574
A0A317XLM4	A0A317XQC2	RNA-binding domain-containing protein.	DEAD-domain-containing protein.	0.984
A0A317XLM4	A0A317XQY9	RNA-binding domain-containing protein.	Putative DBP3-putative RNA helicase required for pre-rRNA processing; Belongs to the DEAD box helicase family.	0.801
A0A317XLM4	A0A317XTF1	RNA-binding domain-containing protein.	CBF-domain-containing protein.	0.982
A0A317XLM4	A0A317XTJ6	RNA-binding domain-containing protein.	RNA helicase.	0.727
A0A317XLM4	A0A317XUD7	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.899
A0A317XLM4	A0A317XWY0	RNA-binding domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.973
A0A317XLV5	A0A317XJJ0	RRM domain-containing protein.	DEAD-domain-containing protein.	0.951
A0A317XLV5	A0A317XLM4	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.968