(5 nodes) Mixed, incl. Noc1p-Noc2p complex, and RNA helicase, DEAD-box type, Q motif network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XJJ0	DEAD-domain-containing protein. (688 aa)
	A0A317XLM4	RNA-binding domain-containing protein. (1077 aa)
	A0A317XLV5	RRM domain-containing protein. (766 aa)
	A0A317XQC2	DEAD-domain-containing protein. (902 aa)
	A0A317XTF1	CBF-domain-containing protein. (1204 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XJJ0	A0A317XLM4	DEAD-domain-containing protein.	RNA-binding domain-containing protein.	0.941
A0A317XJJ0	A0A317XLV5	DEAD-domain-containing protein.	RRM domain-containing protein.	0.951
A0A317XJJ0	A0A317XQC2	DEAD-domain-containing protein.	DEAD-domain-containing protein.	0.888
A0A317XJJ0	A0A317XTF1	DEAD-domain-containing protein.	CBF-domain-containing protein.	0.982
A0A317XLM4	A0A317XJJ0	RNA-binding domain-containing protein.	DEAD-domain-containing protein.	0.941
A0A317XLM4	A0A317XLV5	RNA-binding domain-containing protein.	RRM domain-containing protein.	0.968
A0A317XLM4	A0A317XQC2	RNA-binding domain-containing protein.	DEAD-domain-containing protein.	0.984
A0A317XLM4	A0A317XTF1	RNA-binding domain-containing protein.	CBF-domain-containing protein.	0.982
A0A317XLV5	A0A317XJJ0	RRM domain-containing protein.	DEAD-domain-containing protein.	0.951
A0A317XLV5	A0A317XLM4	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.968
A0A317XLV5	A0A317XQC2	RRM domain-containing protein.	DEAD-domain-containing protein.	0.942
A0A317XLV5	A0A317XTF1	RRM domain-containing protein.	CBF-domain-containing protein.	0.969
A0A317XQC2	A0A317XJJ0	DEAD-domain-containing protein.	DEAD-domain-containing protein.	0.888
A0A317XQC2	A0A317XLM4	DEAD-domain-containing protein.	RNA-binding domain-containing protein.	0.984
A0A317XQC2	A0A317XLV5	DEAD-domain-containing protein.	RRM domain-containing protein.	0.942
A0A317XQC2	A0A317XTF1	DEAD-domain-containing protein.	CBF-domain-containing protein.	0.915
A0A317XTF1	A0A317XJJ0	CBF-domain-containing protein.	DEAD-domain-containing protein.	0.982
A0A317XTF1	A0A317XLM4	CBF-domain-containing protein.	RNA-binding domain-containing protein.	0.982
A0A317XTF1	A0A317XLV5	CBF-domain-containing protein.	RRM domain-containing protein.	0.969
A0A317XTF1	A0A317XQC2	CBF-domain-containing protein.	DEAD-domain-containing protein.	0.915