12 items (Testicularia cyperi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XEA2	Utp11-domain-containing protein. (388 aa)
	A0A317XIA0	Nucleic acid-binding protein. (1579 aa)
	A0A317XKU6	Nep1-domain-containing protein. (377 aa)
	A0A317XPU4	BP28CT domain-containing protein. (2312 aa)
	A0A317XQJ1	DRIM domain-containing protein. (3088 aa)
	A0A317XS71	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (402 aa)
	A0A317XT00	Fcf1-domain-containing protein. (209 aa)
	A0A317XT75	CBF-domain-containing protein. (852 aa)
	A0A317XTK9	WD40 repeat-like protein. (497 aa)
	A0A317XX50	BING4CT-domain-containing protein. (645 aa)
	A0A317XXS6	Sas10 domain-containing protein. (799 aa)
	A0A317XZT3	Nop14-like protein. (958 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XEA2	A0A317XIA0	Utp11-domain-containing protein.	Nucleic acid-binding protein.	0.998
A0A317XEA2	A0A317XKU6	Utp11-domain-containing protein.	Nep1-domain-containing protein.	0.998
A0A317XEA2	A0A317XPU4	Utp11-domain-containing protein.	BP28CT domain-containing protein.	0.984
A0A317XEA2	A0A317XQJ1	Utp11-domain-containing protein.	DRIM domain-containing protein.	0.998
A0A317XEA2	A0A317XS71	Utp11-domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
A0A317XEA2	A0A317XT00	Utp11-domain-containing protein.	Fcf1-domain-containing protein.	0.999
A0A317XEA2	A0A317XT75	Utp11-domain-containing protein.	CBF-domain-containing protein.	0.999
A0A317XEA2	A0A317XTK9	Utp11-domain-containing protein.	WD40 repeat-like protein.	0.999
A0A317XEA2	A0A317XX50	Utp11-domain-containing protein.	BING4CT-domain-containing protein.	0.999
A0A317XEA2	A0A317XXS6	Utp11-domain-containing protein.	Sas10 domain-containing protein.	0.999
A0A317XEA2	A0A317XZT3	Utp11-domain-containing protein.	Nop14-like protein.	0.999
A0A317XIA0	A0A317XEA2	Nucleic acid-binding protein.	Utp11-domain-containing protein.	0.998
A0A317XIA0	A0A317XKU6	Nucleic acid-binding protein.	Nep1-domain-containing protein.	0.998
A0A317XIA0	A0A317XPU4	Nucleic acid-binding protein.	BP28CT domain-containing protein.	0.999
A0A317XIA0	A0A317XQJ1	Nucleic acid-binding protein.	DRIM domain-containing protein.	0.999
A0A317XIA0	A0A317XS71	Nucleic acid-binding protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
A0A317XIA0	A0A317XT00	Nucleic acid-binding protein.	Fcf1-domain-containing protein.	0.998
A0A317XIA0	A0A317XT75	Nucleic acid-binding protein.	CBF-domain-containing protein.	0.999
A0A317XIA0	A0A317XTK9	Nucleic acid-binding protein.	WD40 repeat-like protein.	0.998
A0A317XIA0	A0A317XX50	Nucleic acid-binding protein.	BING4CT-domain-containing protein.	0.999