(40 nodes) Catalytic step 2 spliceosome, and mRNA Splicing - Major Pathway network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XEM3	RRM domain-containing protein. (499 aa)
	A0A317XEX5	Uncharacterized protein. (609 aa)
	A0A317XF76	Cyclophilin-like protein. (538 aa)
	A0A317XH96	WD40 repeat-like protein. (714 aa)
	A0A317XHR1	Uncharacterized protein. (304 aa)
	A0A317XHV8	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (168 aa)
	A0A317XJ46	Uncharacterized protein. (319 aa)
	A0A317XJE3	Cwf18-domain-containing protein. (195 aa)
	A0A317XJI9	Cwf21-domain-containing protein. (171 aa)
	A0A317XJK2	Putative G10 protein. (148 aa)
	A0A317XKR9	Uncharacterized protein. (824 aa)
	A0A317XLK8	Slu7 domain-containing protein. (744 aa)
	A0A317XLY9	WD40 repeat-like protein. (668 aa)
	A0A317XM47	DUF572-domain-containing protein. (337 aa)
	A0A317XMC0	Uncharacterized protein. (576 aa)
	A0A317XMU8	Uncharacterized protein. (479 aa)
	A0A317XN87	SKIP_SNW domain-containing protein. (623 aa)
	A0A317XPL0	RRM domain-containing protein. (122 aa)
	A0A317XR82	Uncharacterized protein. (765 aa)
	A0A317XRQ3	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
	A0A317XS05	Uncharacterized protein. (278 aa)
	A0A317XS67	DUF1604-domain-containing protein. (876 aa)
	A0A317XSH1	SMAD/FHA domain-containing protein. (175 aa)
	A0A317XSJ1	MIF4G-domain-containing protein. (853 aa)
	A0A317XSQ2	Putative MTR4-involved in nucleocytoplasmic transport of mRNA. (1177 aa)
	A0A317XTA8	Putative PRP16-RNA-dependent ATPase. (1315 aa)
	A0A317XTH0	Uncharacterized protein. (1970 aa)
	A0A317XTU1	P-loop containing nucleoside triphosphate hydrolase protein. (887 aa)
	A0A317XUS2	DUF262 domain-containing protein. (486 aa)
	A0A317XV77	P-loop containing nucleoside triphosphate hydrolase protein. (1397 aa)
	A0A317XVE1	Uncharacterized protein. (985 aa)
	A0A317XW27	Cir_N domain-containing protein. (346 aa)
	A0A317XW30	Uncharacterized protein. (400 aa)
	A0A317XX12	SYF2-domain-containing protein. (393 aa)
	A0A317XX22	Uncharacterized protein. (342 aa)
	A0A317XXY2	Uncharacterized protein. (750 aa)
	A0A317XY11	Prp18-domain-containing protein. (415 aa)
	A0A317XYF1	Isy1-domain-containing protein. (428 aa)
	A0A317XYP9	Putative PRP19-non-snRNP spliceosome component required for DNA repair. (563 aa)
	A0A317Y210	TPR-like protein. (1107 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XEM3	A0A317XEX5	RRM domain-containing protein.	Uncharacterized protein.	0.667
A0A317XEM3	A0A317XF76	RRM domain-containing protein.	Cyclophilin-like protein.	0.922
A0A317XEM3	A0A317XH96	RRM domain-containing protein.	WD40 repeat-like protein.	0.880
A0A317XEM3	A0A317XHR1	RRM domain-containing protein.	Uncharacterized protein.	0.625
A0A317XEM3	A0A317XHV8	RRM domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.578
A0A317XEM3	A0A317XJ46	RRM domain-containing protein.	Uncharacterized protein.	0.905
A0A317XEM3	A0A317XJI9	RRM domain-containing protein.	Cwf21-domain-containing protein.	0.930
A0A317XEM3	A0A317XJK2	RRM domain-containing protein.	Putative G10 protein.	0.896
A0A317XEM3	A0A317XLK8	RRM domain-containing protein.	Slu7 domain-containing protein.	0.425
A0A317XEM3	A0A317XLY9	RRM domain-containing protein.	WD40 repeat-like protein.	0.539
A0A317XEM3	A0A317XM47	RRM domain-containing protein.	DUF572-domain-containing protein.	0.626
A0A317XEM3	A0A317XMC0	RRM domain-containing protein.	Uncharacterized protein.	0.737
A0A317XEM3	A0A317XMU8	RRM domain-containing protein.	Uncharacterized protein.	0.965
A0A317XEM3	A0A317XN87	RRM domain-containing protein.	SKIP_SNW domain-containing protein.	0.928
A0A317XEM3	A0A317XPL0	RRM domain-containing protein.	RRM domain-containing protein.	0.677
A0A317XEM3	A0A317XRQ3	RRM domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.667
A0A317XEM3	A0A317XS05	RRM domain-containing protein.	Uncharacterized protein.	0.550
A0A317XEM3	A0A317XS67	RRM domain-containing protein.	DUF1604-domain-containing protein.	0.540
A0A317XEM3	A0A317XSH1	RRM domain-containing protein.	SMAD/FHA domain-containing protein.	0.997
A0A317XEM3	A0A317XSJ1	RRM domain-containing protein.	MIF4G-domain-containing protein.	0.917