(32 nodes) Lagging Strand Synthesis, and Translesion synthesis network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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co-expression

protein homology

Your Input:
	A0A317XHL4	Uncharacterized protein. (1536 aa)
	A0A317XI93	DNA_LIGASE_A3 domain-containing protein. (1184 aa)
	A0A317XIK3	DNA polymerase. (1715 aa)
	A0A317XIN5	Replication factor C subunit 1. (981 aa)
	A0A317XIY9	P-loop containing nucleoside triphosphate hydrolase protein. (344 aa)
	A0A317XJN2	Putative RFC3-DNA replication factor C, 40 kDa subunit. (341 aa)
	A0A317XJT3	DNA polymerase. (1774 aa)
	A0A317XMP0	AAA domain-containing protein. (847 aa)
	A0A317XNF1	Uncharacterized protein. (591 aa)
	A0A317XNX0	AAA domain-containing protein. (1217 aa)
	A0A317XP51	Uncharacterized protein. (461 aa)
	A0A317XQ50	PIN domain-like protein. (696 aa)
	A0A317XQY7	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (1423 aa)
	A0A317XQZ0	Uncharacterized protein. (840 aa)
	A0A317XR86	DNA polymerase. (1062 aa)
	A0A317XRK1	DNA-binding protein. (415 aa)
	A0A317XRS6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2323 aa)
	A0A317XSE4	Histone-fold-containing protein. (272 aa)
	A0A317XT32	Putative RFC5-DNA replication factor C, 40 kd subunit. (354 aa)
	FEN1	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (385 aa)
	A0A317XV22	DNA ligase. (889 aa)
	A0A317XVH6	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (575 aa)
	A0A317XVM7	DNA polymerase alpha, subunit B. (781 aa)
	A0A317XVV0	Uncharacterized protein. (170 aa)
	A0A317XW85	DNA/RNA polymerase. (704 aa)
	A0A317XYG3	Putative RFC2-DNA replication factor C, 41 kd subunit. (380 aa)
	A0A317XZ20	Vezatin domain-containing protein. (1372 aa)
	A0A317XZ92	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (535 aa)
	A0A317XZR4	DNA/RNA polymerase. (811 aa)
	A0A317XZT5	Uncharacterized protein. (606 aa)
	A0A317XZZ8	DNA/RNA polymerase. (877 aa)
	A0A317Y075	Putative proliferating cell nuclear antigen. (310 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A317XHL4	A0A317XI93	A0A317XHL4	A0A317XI93	Uncharacterized protein.	DNA_LIGASE_A3 domain-containing protein.	0.584
A0A317XHL4	A0A317XIK3	A0A317XHL4	A0A317XIK3	Uncharacterized protein.	DNA polymerase.	0.790
A0A317XHL4	A0A317XIN5	A0A317XHL4	A0A317XIN5	Uncharacterized protein.	Replication factor C subunit 1.	0.694
A0A317XHL4	A0A317XIY9	A0A317XHL4	A0A317XIY9	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.706
A0A317XHL4	A0A317XJN2	A0A317XHL4	A0A317XJN2	Uncharacterized protein.	Putative RFC3-DNA replication factor C, 40 kDa subunit.	0.706
A0A317XHL4	A0A317XJT3	A0A317XHL4	A0A317XJT3	Uncharacterized protein.	DNA polymerase.	0.990
A0A317XHL4	A0A317XMP0	A0A317XHL4	A0A317XMP0	Uncharacterized protein.	AAA domain-containing protein.	0.630
A0A317XHL4	A0A317XNF1	A0A317XHL4	A0A317XNF1	Uncharacterized protein.	Uncharacterized protein.	0.785
A0A317XHL4	A0A317XQ50	A0A317XHL4	A0A317XQ50	Uncharacterized protein.	PIN domain-like protein.	0.603
A0A317XHL4	A0A317XQZ0	A0A317XHL4	A0A317XQZ0	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A317XHL4	A0A317XR86	A0A317XHL4	A0A317XR86	Uncharacterized protein.	DNA polymerase.	0.849
A0A317XHL4	A0A317XRK1	A0A317XHL4	A0A317XRK1	Uncharacterized protein.	DNA-binding protein.	0.997
A0A317XHL4	A0A317XRS6	A0A317XHL4	A0A317XRS6	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.857
A0A317XHL4	A0A317XSE4	A0A317XHL4	A0A317XSE4	Uncharacterized protein.	Histone-fold-containing protein.	0.572
A0A317XHL4	A0A317XT32	A0A317XHL4	A0A317XT32	Uncharacterized protein.	Putative RFC5-DNA replication factor C, 40 kd subunit.	0.706
A0A317XHL4	A0A317XV22	A0A317XHL4	A0A317XV22	Uncharacterized protein.	DNA ligase.	0.584
A0A317XHL4	A0A317XVH6	A0A317XHL4	A0A317XVH6	Uncharacterized protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.576
A0A317XHL4	A0A317XVV0	A0A317XHL4	A0A317XVV0	Uncharacterized protein.	Uncharacterized protein.	0.516
A0A317XHL4	A0A317XW85	A0A317XHL4	A0A317XW85	Uncharacterized protein.	DNA/RNA polymerase.	0.974
A0A317XHL4	A0A317XYG3	A0A317XHL4	A0A317XYG3	Uncharacterized protein.	Putative RFC2-DNA replication factor C, 41 kd subunit.	0.706