(46 nodes) Mixed, incl. Ubiquitin-like protein conjugating enzyme activity, and Processing and activation of SUMO network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XFG1	Uncharacterized protein. (369 aa)
	A0A317XFN6	RNI-like protein. (800 aa)
	A0A317XFQ5	UBC-like protein. (332 aa)
	A0A317XG65	UBIQUITIN_CONJUGAT_2 domain-containing protein. (964 aa)
	A0A317XH81	Uncharacterized protein. (1438 aa)
	A0A317XHI7	Uncharacterized protein. (679 aa)
	A0A317XHR4	Kinase-like protein. (692 aa)
	A0A317XHW4	UBC-like protein. (190 aa)
	A0A317XIX5	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1530 aa)
	A0A317XJV5	Uncharacterized protein. (1773 aa)
	A0A317XJZ9	Putative ubiquitin--protein ligase hus5; Belongs to the ubiquitin-conjugating enzyme family. (159 aa)
	A0A317XKE3	Putative UBC1-E2 ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (229 aa)
	A0A317XKI6	Putative ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family. (173 aa)
	A0A317XL44	UBC-like protein. (141 aa)
	A0A317XLD0	SNF2_N domain-containing protein. (543 aa)
	A0A317XLE7	Cysteine proteinase. (356 aa)
	A0A317XLG7	Putative UBA1-ubiquitin-protein ligase, E1-like enzyme; Belongs to the ubiquitin-activating E1 family. (1018 aa)
	A0A317XLJ5	Rad4-domain-containing protein. (1390 aa)
	A0A317XLK1	UBC-like protein. (152 aa)
	A0A317XMA3	RING-type domain-containing protein. (794 aa)
	A0A317XMC9	Urb2 domain-containing protein. (1621 aa)
	A0A317XMV0	Uncharacterized protein. (1002 aa)
	A0A317XMV6	Uncharacterized protein. (818 aa)
	A0A317XMV7	Putative ubiquitin-conjugating enzyme e2-23 kDa; Belongs to the ubiquitin-conjugating enzyme family. (186 aa)
	A0A317XND8	UV excision repair protein Rad23. (395 aa)
	A0A317XPC2	Putative UBC5-E2 ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (150 aa)
	A0A317XPP3	RBR-type E3 ubiquitin transferase. (502 aa)
	A0A317XQL8	Putative ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
	A0A317XRM9	Uncharacterized protein. (329 aa)
	A0A317XRX4	Uncharacterized protein. (762 aa)
	A0A317XRX6	Uncharacterized protein. (826 aa)
	A0A317XSR1	Ubiquitin. (381 aa)
	A0A317XT20	Putative ubiquitin conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family. (163 aa)
	A0A317XT31	P-loop containing nucleoside triphosphate hydrolase protein. (1047 aa)
	A0A317XUT7	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (1019 aa)
	A0A317XUZ5	Ubiquitin-like protein. (93 aa)
	A0A317XVH4	Putative ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family. (174 aa)
	A0A317XVH9	Uncharacterized protein. (2069 aa)
	A0A317XWC4	ULP_PROTEASE domain-containing protein. (1755 aa)
	A0A317XXH3	HECT domain-containing protein. (1045 aa)
	A0A317XXH4	Uncharacterized protein. (510 aa)
	A0A317XXN0	ThiF domain-containing protein. (476 aa)
	A0A317XXP7	Cysteine proteinase. (667 aa)
	A0A317XY24	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (177 aa)
	A0A317XY43	Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (169 aa)
	A0A317XZI5	Uncharacterized protein. (568 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XFG1	A0A317XFQ5	Uncharacterized protein.	UBC-like protein.	0.784
A0A317XFG1	A0A317XG65	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.787
A0A317XFG1	A0A317XH81	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A317XFG1	A0A317XIX5	Uncharacterized protein.	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.	0.849
A0A317XFG1	A0A317XJV5	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A317XFG1	A0A317XJZ9	Uncharacterized protein.	Putative ubiquitin--protein ligase hus5; Belongs to the ubiquitin-conjugating enzyme family.	0.962
A0A317XFG1	A0A317XKE3	Uncharacterized protein.	Putative UBC1-E2 ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.857
A0A317XFG1	A0A317XKI6	Uncharacterized protein.	Putative ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	0.812
A0A317XFG1	A0A317XL44	Uncharacterized protein.	UBC-like protein.	0.705
A0A317XFG1	A0A317XLD0	Uncharacterized protein.	SNF2_N domain-containing protein.	0.682
A0A317XFG1	A0A317XLG7	Uncharacterized protein.	Putative UBA1-ubiquitin-protein ligase, E1-like enzyme; Belongs to the ubiquitin-activating E1 family.	0.840
A0A317XFG1	A0A317XLJ5	Uncharacterized protein.	Rad4-domain-containing protein.	0.604
A0A317XFG1	A0A317XLK1	Uncharacterized protein.	UBC-like protein.	0.796
A0A317XFG1	A0A317XMA3	Uncharacterized protein.	RING-type domain-containing protein.	0.652
A0A317XFG1	A0A317XMC9	Uncharacterized protein.	Urb2 domain-containing protein.	0.587
A0A317XFG1	A0A317XMV0	Uncharacterized protein.	Uncharacterized protein.	0.727
A0A317XFG1	A0A317XMV6	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A317XFG1	A0A317XND8	Uncharacterized protein.	UV excision repair protein Rad23.	0.799
A0A317XFG1	A0A317XPC2	Uncharacterized protein.	Putative UBC5-E2 ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.788
A0A317XFG1	A0A317XQL8	Uncharacterized protein.	Putative ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	0.788