(5 nodes) Outer kinetochore network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XJ60	Uncharacterized protein. (161 aa)
	A0A317XN88	Uncharacterized protein. (360 aa)
	A0A317XPS2	Uncharacterized protein. (157 aa)
	A0A317XPV2	Uncharacterized protein. (200 aa)
	A0A317XVI4	Uncharacterized protein. (173 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XJ60	A0A317XN88	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A317XJ60	A0A317XPS2	Uncharacterized protein.	Uncharacterized protein.	0.878
A0A317XJ60	A0A317XPV2	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A317XJ60	A0A317XVI4	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A317XN88	A0A317XJ60	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A317XN88	A0A317XPS2	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A317XN88	A0A317XPV2	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A317XN88	A0A317XVI4	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A317XPS2	A0A317XJ60	Uncharacterized protein.	Uncharacterized protein.	0.878
A0A317XPS2	A0A317XN88	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A317XPS2	A0A317XPV2	Uncharacterized protein.	Uncharacterized protein.	0.793
A0A317XPS2	A0A317XVI4	Uncharacterized protein.	Uncharacterized protein.	0.888
A0A317XPV2	A0A317XJ60	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A317XPV2	A0A317XN88	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A317XPV2	A0A317XPS2	Uncharacterized protein.	Uncharacterized protein.	0.793
A0A317XPV2	A0A317XVI4	Uncharacterized protein.	Uncharacterized protein.	0.928
A0A317XVI4	A0A317XJ60	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A317XVI4	A0A317XN88	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A317XVI4	A0A317XPS2	Uncharacterized protein.	Uncharacterized protein.	0.888
A0A317XVI4	A0A317XPV2	Uncharacterized protein.	Uncharacterized protein.	0.928