(12 nodes) Mixed, incl. Ubiquitin conjugating enzyme complex, and Nucleotide-excision repair factor 2 complex network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XFN6	RNI-like protein. (800 aa)
	A0A317XH81	Uncharacterized protein. (1438 aa)
	A0A317XJV5	Uncharacterized protein. (1773 aa)
	A0A317XL44	UBC-like protein. (141 aa)
	A0A317XLD0	SNF2_N domain-containing protein. (543 aa)
	A0A317XLJ5	Rad4-domain-containing protein. (1390 aa)
	A0A317XMV0	Uncharacterized protein. (1002 aa)
	A0A317XND8	UV excision repair protein Rad23. (395 aa)
	A0A317XQL8	Putative ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
	A0A317XT31	P-loop containing nucleoside triphosphate hydrolase protein. (1047 aa)
	A0A317XXH4	Uncharacterized protein. (510 aa)
	A0A317XY24	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (177 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XFN6	A0A317XLJ5	RNI-like protein.	Rad4-domain-containing protein.	0.751
A0A317XFN6	A0A317XMV0	RNI-like protein.	Uncharacterized protein.	0.723
A0A317XFN6	A0A317XND8	RNI-like protein.	UV excision repair protein Rad23.	0.853
A0A317XH81	A0A317XJV5	Uncharacterized protein.	Uncharacterized protein.	0.453
A0A317XH81	A0A317XL44	Uncharacterized protein.	UBC-like protein.	0.941
A0A317XH81	A0A317XLJ5	Uncharacterized protein.	Rad4-domain-containing protein.	0.668
A0A317XH81	A0A317XMV0	Uncharacterized protein.	Uncharacterized protein.	0.611
A0A317XH81	A0A317XND8	Uncharacterized protein.	UV excision repair protein Rad23.	0.625
A0A317XH81	A0A317XQL8	Uncharacterized protein.	Putative ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	0.944
A0A317XH81	A0A317XT31	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.408
A0A317XH81	A0A317XXH4	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A317XH81	A0A317XY24	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.816
A0A317XJV5	A0A317XH81	Uncharacterized protein.	Uncharacterized protein.	0.453
A0A317XJV5	A0A317XL44	Uncharacterized protein.	UBC-like protein.	0.847
A0A317XJV5	A0A317XLJ5	Uncharacterized protein.	Rad4-domain-containing protein.	0.647
A0A317XJV5	A0A317XMV0	Uncharacterized protein.	Uncharacterized protein.	0.615
A0A317XJV5	A0A317XND8	Uncharacterized protein.	UV excision repair protein Rad23.	0.611
A0A317XJV5	A0A317XQL8	Uncharacterized protein.	Putative ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	0.808
A0A317XJV5	A0A317XT31	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.451
A0A317XJV5	A0A317XXH4	Uncharacterized protein.	Uncharacterized protein.	0.869