(12 nodes) snRNA processing network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XHP3	Bin3-domain-containing protein. (410 aa)
	A0A317XIG8	KH_dom_type_1 domain-containing protein. (414 aa)
	A0A317XUC6	Uncharacterized protein. (896 aa)
	A0A317XYY7	Ribosomal protein S5 domain 2-like protein. (384 aa)
	A0A317XU41	Uncharacterized protein. (247 aa)
	A0A317XSN6	Putative exosome complex exonuclease rrp41. (270 aa)
	A0A317XS02	Putative RRP45-exosome complex exonuclease. (313 aa)
	A0A317XQR0	RNase_PH domain-containing protein. (322 aa)
	A0A317XYR1	RNase_PH domain-containing protein. (314 aa)
	A0A317XP49	Uncharacterized protein. (312 aa)
	A0A317XIQ2	Ribosomal protein S5 domain 2-like protein. (300 aa)
	A0A317XYE2	Uncharacterized protein. (296 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XIG8	A0A317XIQ2	KH_dom_type_1 domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.998
A0A317XIG8	A0A317XP49	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.999
A0A317XIG8	A0A317XQR0	KH_dom_type_1 domain-containing protein.	RNase_PH domain-containing protein.	0.999
A0A317XIG8	A0A317XS02	KH_dom_type_1 domain-containing protein.	Putative RRP45-exosome complex exonuclease.	0.999
A0A317XIG8	A0A317XSN6	KH_dom_type_1 domain-containing protein.	Putative exosome complex exonuclease rrp41.	0.999
A0A317XIG8	A0A317XU41	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.960
A0A317XIG8	A0A317XUC6	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.960
A0A317XIG8	A0A317XYR1	KH_dom_type_1 domain-containing protein.	RNase_PH domain-containing protein.	0.999
A0A317XIG8	A0A317XYY7	KH_dom_type_1 domain-containing protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A317XIQ2	A0A317XIG8	Ribosomal protein S5 domain 2-like protein.	KH_dom_type_1 domain-containing protein.	0.998
A0A317XIQ2	A0A317XP49	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.998
A0A317XIQ2	A0A317XQR0	Ribosomal protein S5 domain 2-like protein.	RNase_PH domain-containing protein.	0.999
A0A317XIQ2	A0A317XS02	Ribosomal protein S5 domain 2-like protein.	Putative RRP45-exosome complex exonuclease.	0.999
A0A317XIQ2	A0A317XSN6	Ribosomal protein S5 domain 2-like protein.	Putative exosome complex exonuclease rrp41.	0.999
A0A317XIQ2	A0A317XU41	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.903
A0A317XIQ2	A0A317XUC6	Ribosomal protein S5 domain 2-like protein.	Uncharacterized protein.	0.903
A0A317XIQ2	A0A317XYR1	Ribosomal protein S5 domain 2-like protein.	RNase_PH domain-containing protein.	0.998
A0A317XIQ2	A0A317XYY7	Ribosomal protein S5 domain 2-like protein.	Ribosomal protein S5 domain 2-like protein.	0.996
A0A317XP49	A0A317XIG8	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.999
A0A317XP49	A0A317XIQ2	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.998