(21 nodes) snoRNA binding network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XTK6	Putative SIK1-involved in pre-rRNA processing. (534 aa)
	A0A317XFT1	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (718 aa)
	A0A317XIA0	Nucleic acid-binding protein. (1579 aa)
	A0A317XJV2	Gar1-domain-containing protein. (129 aa)
	A0A317XJZ3	RNA helicase. (943 aa)
	A0A317XMU4	WD40 repeat-like protein. (757 aa)
	A0A317XPL2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (217 aa)
	A0A317XPU4	BP28CT domain-containing protein. (2312 aa)
	A0A317XRZ7	Putative IMP4-component of the U3 small nucleolar ribonucleo protein. (289 aa)
	A0A317XSE3	Bystin-domain-containing protein. (536 aa)
	A0A317XSL3	Putative NOP10-nucleolar rRNA processing protein. (64 aa)
	A0A317XTC8	Putative IMP3-component of the U3 small nucleolar ribonucleo protein. (182 aa)
	A0A317XUR3	DUF663-domain-containing protein. (992 aa)
	A0A317Y0M9	Uncharacterized protein. (967 aa)
	A0A317XZT3	Nop14-like protein. (958 aa)
	A0A317XZ24	WD40 repeat-like protein. (1079 aa)
	A0A317XYB0	Nucleolar protein 58. (589 aa)
	A0A317XXI8	WD40 repeat-like protein. (1227 aa)
	A0A317XWZ3	Uncharacterized protein. (1117 aa)
	BCV70DRAFT_886	WD40 repeat-like protein. (573 aa)
	A0A317XV74	Putative BMS1-GTP-binding protein required for distinct steps of 40S ribosome biogenesis. (1156 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A317XFT1	A0A317XIA0	A0A317XFT1	A0A317XIA0	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Nucleic acid-binding protein.	0.992
A0A317XFT1	A0A317XJZ3	A0A317XFT1	A0A317XJZ3	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	RNA helicase.	0.756
A0A317XFT1	A0A317XMU4	A0A317XFT1	A0A317XMU4	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	WD40 repeat-like protein.	0.846
A0A317XFT1	A0A317XPU4	A0A317XFT1	A0A317XPU4	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	BP28CT domain-containing protein.	0.844
A0A317XFT1	A0A317XRZ7	A0A317XFT1	A0A317XRZ7	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Putative IMP4-component of the U3 small nucleolar ribonucleo protein.	0.958
A0A317XFT1	A0A317XSE3	A0A317XFT1	A0A317XSE3	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Bystin-domain-containing protein.	0.800
A0A317XFT1	A0A317XTC8	A0A317XFT1	A0A317XTC8	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Putative IMP3-component of the U3 small nucleolar ribonucleo protein.	0.898
A0A317XFT1	A0A317XUR3	A0A317XFT1	A0A317XUR3	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	DUF663-domain-containing protein.	0.871
A0A317XFT1	A0A317XV74	A0A317XFT1	A0A317XV74	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Putative BMS1-GTP-binding protein required for distinct steps of 40S ribosome biogenesis.	0.490
A0A317XFT1	A0A317XWZ3	A0A317XFT1	A0A317XWZ3	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Uncharacterized protein.	0.848
A0A317XFT1	A0A317XXI8	A0A317XFT1	A0A317XXI8	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	WD40 repeat-like protein.	0.748
A0A317XFT1	A0A317XZ24	A0A317XFT1	A0A317XZ24	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	WD40 repeat-like protein.	0.570
A0A317XFT1	A0A317XZT3	A0A317XFT1	A0A317XZT3	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Nop14-like protein.	0.997
A0A317XFT1	A0A317Y0M9	A0A317XFT1	A0A317Y0M9	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Uncharacterized protein.	0.778
A0A317XFT1	BCV70DRAFT_886	A0A317XFT1	A0A317XW01	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	WD40 repeat-like protein.	0.882
A0A317XIA0	A0A317XFT1	A0A317XIA0	A0A317XFT1	Nucleic acid-binding protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.992
A0A317XIA0	A0A317XJV2	A0A317XIA0	A0A317XJV2	Nucleic acid-binding protein.	Gar1-domain-containing protein.	0.508
A0A317XIA0	A0A317XJZ3	A0A317XIA0	A0A317XJZ3	Nucleic acid-binding protein.	RNA helicase.	0.963
A0A317XIA0	A0A317XMU4	A0A317XIA0	A0A317XMU4	Nucleic acid-binding protein.	WD40 repeat-like protein.	0.992
A0A317XIA0	A0A317XPL2	A0A317XIA0	A0A317XPL2	Nucleic acid-binding protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.786