(29 nodes) Preribosome, large subunit precursor network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XY77	P-loop containing nucleoside triphosphate hydrolase protein. (711 aa)
	A0A317XZB1	AAA-domain-containing protein. (847 aa)
	A0A317XZ32	Protein MAK16; Belongs to the MAK16 family. (341 aa)
	A0A317XYN6	GN3L_Grn1 domain-containing protein. (667 aa)
	A0A317XY76	Uncharacterized protein. (1220 aa)
	A0A317XY59	Brix-domain-containing protein. (447 aa)
	A0A317XX07	Uncharacterized protein. (360 aa)
	A0A317XWW3	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	A0A317XWM1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (311 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (537 aa)
	A0A317XWD1	Brix-domain-containing protein. (320 aa)
	A0A317XW45	Noc2-domain-containing protein. (743 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (928 aa)
	A0A317XVY7	P-loop containing nucleoside triphosphate hydrolase protein. (950 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (944 aa)
	A0A317XTM5	Las1-domain-containing protein. (640 aa)
	A0A317XTF1	CBF-domain-containing protein. (1204 aa)
	A0A317XSE5	Rsa3 domain-containing protein. (278 aa)
	A0A317XQY9	Putative DBP3-putative RNA helicase required for pre-rRNA processing; Belongs to the DEAD box helicase family. (560 aa)
	A0A317XQC2	DEAD-domain-containing protein. (902 aa)
	A0A317XPV3	RNA helicase. (827 aa)
	A0A317XNG7	Putative NSA2-involved in biogenesis of ribosomal large subunit. (262 aa)
	A0A317XLY2	Nop52-domain-containing protein. (493 aa)
	A0A317XKJ5	Uncharacterized protein. (534 aa)
	A0A317XIW7	C2H2-type domain-containing protein. (128 aa)
	A0A317XIT2	NOC3p-domain-containing protein. (1110 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (693 aa)
	A0A317XGD8	Ebp2-domain-containing protein. (582 aa)
	A0A317XG53	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (351 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A317XG53	A0A317XGD8	A0A317XG53	A0A317XGD8	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Ebp2-domain-containing protein.	0.984
A0A317XG53	A0A317XIT2	A0A317XG53	A0A317XIT2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	NOC3p-domain-containing protein.	0.901
A0A317XG53	A0A317XIW7	A0A317XG53	A0A317XIW7	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	C2H2-type domain-containing protein.	0.936
A0A317XG53	A0A317XKJ5	A0A317XG53	A0A317XKJ5	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Uncharacterized protein.	0.467
A0A317XG53	A0A317XLY2	A0A317XG53	A0A317XLY2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Nop52-domain-containing protein.	0.929
A0A317XG53	A0A317XNG7	A0A317XG53	A0A317XNG7	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Putative NSA2-involved in biogenesis of ribosomal large subunit.	0.945
A0A317XG53	A0A317XPV3	A0A317XG53	A0A317XPV3	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	RNA helicase.	0.682
A0A317XG53	A0A317XQC2	A0A317XG53	A0A317XQC2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	DEAD-domain-containing protein.	0.758
A0A317XG53	A0A317XQY9	A0A317XG53	A0A317XQY9	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Putative DBP3-putative RNA helicase required for pre-rRNA processing; Belongs to the DEAD box helicase family.	0.886
A0A317XG53	A0A317XTF1	A0A317XG53	A0A317XTF1	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	CBF-domain-containing protein.	0.768
A0A317XG53	A0A317XVY7	A0A317XG53	A0A317XVY7	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.913
A0A317XG53	A0A317XW45	A0A317XG53	A0A317XW45	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Noc2-domain-containing protein.	0.940
A0A317XG53	A0A317XWD1	A0A317XG53	A0A317XWD1	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Brix-domain-containing protein.	0.953
A0A317XG53	A0A317XWM1	A0A317XG53	A0A317XWM1	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.979
A0A317XG53	A0A317XWW3	A0A317XG53	A0A317XWW3	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.948
A0A317XG53	A0A317XX07	A0A317XG53	A0A317XX07	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Uncharacterized protein.	0.864
A0A317XG53	A0A317XY59	A0A317XG53	A0A317XY59	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Brix-domain-containing protein.	0.890
A0A317XG53	A0A317XY76	A0A317XG53	A0A317XY76	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Uncharacterized protein.	0.820
A0A317XG53	A0A317XY77	A0A317XG53	A0A317XY77	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.978
A0A317XG53	A0A317XYN6	A0A317XG53	A0A317XYN6	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	GN3L_Grn1 domain-containing protein.	0.913