(50 nodes) RNA 3-end processing network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XMX0	Putative KIN28-cyclin-dependent ser/thr protein kinase; Belongs to the protein kinase superfamily. (379 aa)
	A0A317Y2G1	Ssu72-like protein. (188 aa)
	A0A317Y2E5	Uncharacterized protein. (1287 aa)
	A0A317Y0J3	Uncharacterized protein. (384 aa)
	A0A317Y0H2	Plus3 domain-containing protein. (671 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (627 aa)
	A0A317XZE7	Fibrillarin. (337 aa)
	A0A317XZ45	Uncharacterized protein. (792 aa)
	A0A317XYY7	Ribosomal protein S5 domain 2-like protein. (384 aa)
	A0A317XYR1	RNase_PH domain-containing protein. (314 aa)
	A0A317XYE2	Uncharacterized protein. (296 aa)
	A0A317XYB0	Nucleolar protein 58. (589 aa)
	A0A317XY63	Uncharacterized protein. (886 aa)
	A0A317XX06	WD40 repeat-like protein. (689 aa)
	A0A317XWH8	WD40 repeat-like protein. (390 aa)
	A0A317XW55	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (109 aa)
	A0A317XVZ3	CDC73-domain-containing protein. (475 aa)
	A0A317XVY2	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (210 aa)
	A0A317XVL2	Uncharacterized protein. (1214 aa)
	A0A317XUR3	DUF663-domain-containing protein. (992 aa)
	A0A317XUC6	Uncharacterized protein. (896 aa)
	A0A317XU41	Uncharacterized protein. (247 aa)
	A0A317XTW6	Uncharacterized protein. (982 aa)
	A0A317XTT9	Suf-domain-containing protein. (1010 aa)
	A0A317XSN6	Putative exosome complex exonuclease rrp41. (270 aa)
	A0A317XS02	Putative RRP45-exosome complex exonuclease. (313 aa)
	A0A317XRD9	Uncharacterized protein. (489 aa)
	A0A317XRC0	Uncharacterized protein. (753 aa)
	A0A317XQR0	RNase_PH domain-containing protein. (322 aa)
	A0A317XQD0	Cleavage and polyadenylation specificity factor subunit 2. (1048 aa)
	A0A317XQB4	Fip1 domain-containing protein. (904 aa)
	A0A317XQ46	Uncharacterized protein. (1252 aa)
	A0A317XP81	CPSF_A domain-containing protein. (1669 aa)
	A0A317XP49	Uncharacterized protein. (312 aa)
	A0A317XNL1	Putative DIS3 3`-5` exoribonuclease required for 3` end formation of 5.8S rRNA; Belongs to the RNR ribonuclease family. (1027 aa)
	A0A317XN43	Uncharacterized protein. (1347 aa)
	A0A317XMI2	RRM domain-containing protein. (375 aa)
	A0A317XMD7	Uncharacterized protein. (953 aa)
	A0A317XKL6	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (662 aa)
	A0A317XK17	TPK_B1_binding domain-containing protein. (785 aa)
	A0A317XJD2	HRDC domain-containing protein. (1030 aa)
	A0A317XIQ2	Ribosomal protein S5 domain 2-like protein. (300 aa)
	A0A317XIG8	KH_dom_type_1 domain-containing protein. (414 aa)
	A0A317XIB3	SAP domain-containing protein. (458 aa)
	A0A317XHM5	Putative rRNA pseudouridine synthase. (504 aa)
	A0A317XHD5	EXOSC1 domain-containing protein. (294 aa)
	A0A317XFR1	PolyA_pol domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (734 aa)
	A0A317XEZ2	RPOL4c domain-containing protein. (165 aa)
	A0A317XEG7	CID domain-containing protein. (609 aa)
	A0A317XE86	PUA-domain-containing protein. (248 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A317XE86	A0A317XUR3	A0A317XE86	A0A317XUR3	PUA-domain-containing protein.	DUF663-domain-containing protein.	0.400
A0A317XE86	A0A317XYB0	A0A317XE86	A0A317XYB0	PUA-domain-containing protein.	Nucleolar protein 58.	0.962
A0A317XE86	A0A317XZE7	A0A317XE86	A0A317XZE7	PUA-domain-containing protein.	Fibrillarin.	0.976
A0A317XEG7	A0A317XKL6	A0A317XEG7	A0A317XKL6	CID domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.920
A0A317XEG7	A0A317XMI2	A0A317XEG7	A0A317XMI2	CID domain-containing protein.	RRM domain-containing protein.	0.987
A0A317XEG7	A0A317XMX0	A0A317XEG7	A0A317XMX0	CID domain-containing protein.	Putative KIN28-cyclin-dependent ser/thr protein kinase; Belongs to the protein kinase superfamily.	0.695
A0A317XEG7	A0A317XP81	A0A317XEG7	A0A317XP81	CID domain-containing protein.	CPSF_A domain-containing protein.	0.986
A0A317XEG7	A0A317XQ46	A0A317XEG7	A0A317XQ46	CID domain-containing protein.	Uncharacterized protein.	0.987
A0A317XEG7	A0A317XQB4	A0A317XEG7	A0A317XQB4	CID domain-containing protein.	Fip1 domain-containing protein.	0.967
A0A317XEG7	A0A317XQD0	A0A317XEG7	A0A317XQD0	CID domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.989
A0A317XEG7	A0A317XTT9	A0A317XEG7	A0A317XTT9	CID domain-containing protein.	Suf-domain-containing protein.	0.996
A0A317XEG7	A0A317XTW6	A0A317XEG7	A0A317XTW6	CID domain-containing protein.	Uncharacterized protein.	0.987
A0A317XEG7	A0A317XVL2	A0A317XEG7	A0A317XVL2	CID domain-containing protein.	Uncharacterized protein.	0.819
A0A317XEG7	A0A317XVY2	A0A317XEG7	A0A317XVY2	CID domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.859
A0A317XEG7	A0A317XW55	A0A317XEG7	A0A317XW55	CID domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.557
A0A317XEG7	A0A317XX06	A0A317XEG7	A0A317XX06	CID domain-containing protein.	WD40 repeat-like protein.	0.868
A0A317XEG7	A0A317XY63	A0A317XEG7	A0A317XY63	CID domain-containing protein.	Uncharacterized protein.	0.876
A0A317XEG7	A0A317Y0J3	A0A317XEG7	A0A317Y0J3	CID domain-containing protein.	Uncharacterized protein.	0.923
A0A317XEG7	A0A317Y2G1	A0A317XEG7	A0A317Y2G1	CID domain-containing protein.	Ssu72-like protein.	0.965
A0A317XEG7	CLP1	A0A317XEG7	A0A317XZX7	CID domain-containing protein.	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	0.999