(13 nodes) RNA polymerase II preinitiation complex assembly network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XR21	CBS domain-containing protein. (380 aa)
	A0A317XFW0	Uncharacterized protein. (1237 aa)
	A0A317XG36	Putative SUA7-TFIIB subunit, factor E. (377 aa)
	A0A317XP99	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (95 aa)
	A0A317XQJ5	TFIID-31kDa-domain-containing protein. (283 aa)
	A0A317XS60	TAFII55_N domain-containing protein. (673 aa)
	A0A317XT71	Histone-fold-containing protein. (118 aa)
	A0A317XTG4	TFIID_20kDa domain-containing protein. (897 aa)
	A0A317XTR0	TAFII28-domain-containing protein. (438 aa)
	A0A317XV09	Transcription elongation factor. (312 aa)
	A0A317XXF5	Uncharacterized protein. (382 aa)
	A0A317XZE3	TAF domain-containing protein. (710 aa)
	A0A317XZQ0	Uncharacterized protein. (426 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XFW0	A0A317XG36	Uncharacterized protein.	Putative SUA7-TFIIB subunit, factor E.	0.976
A0A317XFW0	A0A317XP99	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.941
A0A317XFW0	A0A317XQJ5	Uncharacterized protein.	TFIID-31kDa-domain-containing protein.	0.999
A0A317XFW0	A0A317XR21	Uncharacterized protein.	CBS domain-containing protein.	0.999
A0A317XFW0	A0A317XS60	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.999
A0A317XFW0	A0A317XTG4	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.999
A0A317XFW0	A0A317XTR0	Uncharacterized protein.	TAFII28-domain-containing protein.	0.999
A0A317XFW0	A0A317XV09	Uncharacterized protein.	Transcription elongation factor.	0.774
A0A317XFW0	A0A317XXF5	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A317XFW0	A0A317XZE3	Uncharacterized protein.	TAF domain-containing protein.	0.999
A0A317XFW0	A0A317XZQ0	Uncharacterized protein.	Uncharacterized protein.	0.863
A0A317XG36	A0A317XFW0	Putative SUA7-TFIIB subunit, factor E.	Uncharacterized protein.	0.976
A0A317XG36	A0A317XP99	Putative SUA7-TFIIB subunit, factor E.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.981
A0A317XG36	A0A317XQJ5	Putative SUA7-TFIIB subunit, factor E.	TFIID-31kDa-domain-containing protein.	0.971
A0A317XG36	A0A317XR21	Putative SUA7-TFIIB subunit, factor E.	CBS domain-containing protein.	0.962
A0A317XG36	A0A317XS60	Putative SUA7-TFIIB subunit, factor E.	TAFII55_N domain-containing protein.	0.920
A0A317XG36	A0A317XT71	Putative SUA7-TFIIB subunit, factor E.	Histone-fold-containing protein.	0.621
A0A317XG36	A0A317XTG4	Putative SUA7-TFIIB subunit, factor E.	TFIID_20kDa domain-containing protein.	0.955
A0A317XG36	A0A317XTR0	Putative SUA7-TFIIB subunit, factor E.	TAFII28-domain-containing protein.	0.970
A0A317XG36	A0A317XV09	Putative SUA7-TFIIB subunit, factor E.	Transcription elongation factor.	0.971