(16 nodes) ncRNA transcription network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XXP5	TPR-like protein. (1361 aa)
	A0A317XIV5	Uncharacterized protein. (530 aa)
	A0A317XK83	Uncharacterized protein. (2138 aa)
	A0A317XKK6	Uncharacterized protein. (531 aa)
	A0A317XM76	Uncharacterized protein. (257 aa)
	A0A317XUQ2	Uncharacterized protein. (71 aa)
	A0A317XV28	Uncharacterized protein. (119 aa)
	A0A317XVG5	Uncharacterized protein. (67 aa)
	A0A317XX99	Putative Rpo26-18kD subunit of DNA-directed RNA polymerases I, II, III. (138 aa)
	A0A317XXC3	Uncharacterized protein. (1294 aa)
	A0A317XYC7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1282 aa)
	A0A317XYN3	SWIB-domain-containing protein. (266 aa)
	A0A317XYY1	Putative DNA-directed RNA polymerase II chain Rpb7. (170 aa)
	A0A317Y035	Uncharacterized protein. (736 aa)
	A0A317Y0H2	Plus3 domain-containing protein. (671 aa)
	A0A317Y0V2	RBP11-like subunits of RNA polymerase. (155 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XIV5	A0A317XV28	Uncharacterized protein.	Uncharacterized protein.	0.572
A0A317XIV5	A0A317XVG5	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A317XIV5	A0A317XX99	Uncharacterized protein.	Putative Rpo26-18kD subunit of DNA-directed RNA polymerases I, II, III.	0.581
A0A317XIV5	A0A317Y035	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A317XKK6	A0A317XM76	Uncharacterized protein.	Uncharacterized protein.	0.594
A0A317XKK6	A0A317XUQ2	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A317XKK6	A0A317XV28	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A317XKK6	A0A317XX99	Uncharacterized protein.	Putative Rpo26-18kD subunit of DNA-directed RNA polymerases I, II, III.	0.999
A0A317XKK6	A0A317XXC3	Uncharacterized protein.	Uncharacterized protein.	0.784
A0A317XKK6	A0A317XYC7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A317XKK6	A0A317XYY1	Uncharacterized protein.	Putative DNA-directed RNA polymerase II chain Rpb7.	0.475
A0A317XKK6	A0A317Y0V2	Uncharacterized protein.	RBP11-like subunits of RNA polymerase.	0.985
A0A317XM76	A0A317XKK6	Uncharacterized protein.	Uncharacterized protein.	0.594
A0A317XM76	A0A317XUQ2	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A317XM76	A0A317XV28	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A317XM76	A0A317XX99	Uncharacterized protein.	Putative Rpo26-18kD subunit of DNA-directed RNA polymerases I, II, III.	0.997
A0A317XM76	A0A317XXP5	Uncharacterized protein.	TPR-like protein.	0.692
A0A317XM76	A0A317XYC7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.951
A0A317XM76	A0A317Y0V2	Uncharacterized protein.	RBP11-like subunits of RNA polymerase.	0.997
A0A317XUQ2	A0A317XKK6	Uncharacterized protein.	Uncharacterized protein.	0.998