(4 nodes) RNA polymerase, RBP11-like subunit network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XLW9	Insert subdomain of RNA polymerase alpha subunit. (376 aa)
	A0A317XM56	Putative Rpc40-40 kd subunit of DNA-directed RNA polymerases I and III. (399 aa)
	A0A317XU23	RBP11-like subunits of RNA polymerase. (154 aa)
	A0A317Y0V2	RBP11-like subunits of RNA polymerase. (155 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A317XLW9	A0A317XM56	Insert subdomain of RNA polymerase alpha subunit.	Putative Rpc40-40 kd subunit of DNA-directed RNA polymerases I and III.	0.759
A0A317XLW9	A0A317XU23	Insert subdomain of RNA polymerase alpha subunit.	RBP11-like subunits of RNA polymerase.	0.999
A0A317XLW9	A0A317Y0V2	Insert subdomain of RNA polymerase alpha subunit.	RBP11-like subunits of RNA polymerase.	0.995
A0A317XM56	A0A317XLW9	Putative Rpc40-40 kd subunit of DNA-directed RNA polymerases I and III.	Insert subdomain of RNA polymerase alpha subunit.	0.759
A0A317XM56	A0A317XU23	Putative Rpc40-40 kd subunit of DNA-directed RNA polymerases I and III.	RBP11-like subunits of RNA polymerase.	0.970
A0A317XM56	A0A317Y0V2	Putative Rpc40-40 kd subunit of DNA-directed RNA polymerases I and III.	RBP11-like subunits of RNA polymerase.	0.999
A0A317XU23	A0A317XLW9	RBP11-like subunits of RNA polymerase.	Insert subdomain of RNA polymerase alpha subunit.	0.999
A0A317XU23	A0A317XM56	RBP11-like subunits of RNA polymerase.	Putative Rpc40-40 kd subunit of DNA-directed RNA polymerases I and III.	0.970
A0A317XU23	A0A317Y0V2	RBP11-like subunits of RNA polymerase.	RBP11-like subunits of RNA polymerase.	0.692
A0A317Y0V2	A0A317XLW9	RBP11-like subunits of RNA polymerase.	Insert subdomain of RNA polymerase alpha subunit.	0.995
A0A317Y0V2	A0A317XM56	RBP11-like subunits of RNA polymerase.	Putative Rpc40-40 kd subunit of DNA-directed RNA polymerases I and III.	0.999
A0A317Y0V2	A0A317XU23	RBP11-like subunits of RNA polymerase.	RBP11-like subunits of RNA polymerase.	0.692