(37 nodes) RNA polymerase network (Testicularia cyperi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A317XEZ2	RPOL4c domain-containing protein. (165 aa)
	A0A317XHR9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (131 aa)
	A0A317XHX5	Uncharacterized protein. (574 aa)
	A0A317XJ57	Uncharacterized protein. (513 aa)
	A0A317XKK6	Uncharacterized protein. (531 aa)
	A0A317XKM3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1252 aa)
	A0A317XLE4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1400 aa)
	A0A317XLT6	Zf-CSL-domain-containing protein. (88 aa)
	A0A317XLW9	Insert subdomain of RNA polymerase alpha subunit. (376 aa)
	A0A317XM56	Putative Rpc40-40 kd subunit of DNA-directed RNA polymerases I and III. (399 aa)
	A0A317XM76	Uncharacterized protein. (257 aa)
	A0A317XN47	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1814 aa)
	A0A317XNB5	Uncharacterized protein. (492 aa)
	A0A317XND3	Uncharacterized protein. (579 aa)
	A0A317XNU5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (159 aa)
	A0A317XP25	Uncharacterized protein. (377 aa)
	A0A317XPS4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (133 aa)
	A0A317XR07	Uncharacterized protein. (834 aa)
	A0A317XS95	UreD-domain-containing protein. (835 aa)
	A0A317XSW2	Uncharacterized protein. (1218 aa)
	A0A317XU23	RBP11-like subunits of RNA polymerase. (154 aa)
	A0A317XU33	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (211 aa)
	A0A317XUQ2	Uncharacterized protein. (71 aa)
	A0A317XV09	Transcription elongation factor. (312 aa)
	A0A317XV28	Uncharacterized protein. (119 aa)
	A0A317XV31	Endonuclease/exonuclease/phosphatase. (625 aa)
	A0A317XW55	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (109 aa)
	A0A317XX99	Putative Rpo26-18kD subunit of DNA-directed RNA polymerases I, II, III. (138 aa)
	BCV70DRAFT_607	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1245 aa)
	A0A317XYC7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1282 aa)
	A0A317XYH7	TFIIS central domain-containing protein. (176 aa)
	A0A317XYM4	Uncharacterized protein. (347 aa)
	A0A317XYY1	Putative DNA-directed RNA polymerase II chain Rpb7. (170 aa)
	A0A317Y049	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1782 aa)
	A0A317Y0F0	Putative 25 kd subunit of DNA-directed RNA polymerases I, II and III. (208 aa)
	A0A317Y0V2	RBP11-like subunits of RNA polymerase. (155 aa)
	A0A317Y2D2	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (724 aa)

Your Current Organism:

Testicularia cyperi

NCBI taxonomy Id: 1882483
Other names: T. cyperi

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A317XEZ2	A0A317XHR9	A0A317XEZ2	A0A317XHR9	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.932
A0A317XEZ2	A0A317XHX5	A0A317XEZ2	A0A317XHX5	RPOL4c domain-containing protein.	Uncharacterized protein.	0.506
A0A317XEZ2	A0A317XKM3	A0A317XEZ2	A0A317XKM3	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.951
A0A317XEZ2	A0A317XLE4	A0A317XEZ2	A0A317XLE4	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.401
A0A317XEZ2	A0A317XLW9	A0A317XEZ2	A0A317XLW9	RPOL4c domain-containing protein.	Insert subdomain of RNA polymerase alpha subunit.	0.999
A0A317XEZ2	A0A317XM56	A0A317XEZ2	A0A317XM56	RPOL4c domain-containing protein.	Putative Rpc40-40 kd subunit of DNA-directed RNA polymerases I and III.	0.969
A0A317XEZ2	A0A317XM76	A0A317XEZ2	A0A317XM76	RPOL4c domain-containing protein.	Uncharacterized protein.	0.539
A0A317XEZ2	A0A317XN47	A0A317XEZ2	A0A317XN47	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.404
A0A317XEZ2	A0A317XNU5	A0A317XEZ2	A0A317XNU5	RPOL4c domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
A0A317XEZ2	A0A317XP25	A0A317XEZ2	A0A317XP25	RPOL4c domain-containing protein.	Uncharacterized protein.	0.427
A0A317XEZ2	A0A317XPS4	A0A317XEZ2	A0A317XPS4	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
A0A317XEZ2	A0A317XSW2	A0A317XEZ2	A0A317XSW2	RPOL4c domain-containing protein.	Uncharacterized protein.	0.799
A0A317XEZ2	A0A317XU23	A0A317XEZ2	A0A317XU23	RPOL4c domain-containing protein.	RBP11-like subunits of RNA polymerase.	0.999
A0A317XEZ2	A0A317XU33	A0A317XEZ2	A0A317XU33	RPOL4c domain-containing protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.521
A0A317XEZ2	A0A317XUQ2	A0A317XEZ2	A0A317XUQ2	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999
A0A317XEZ2	A0A317XV09	A0A317XEZ2	A0A317XV09	RPOL4c domain-containing protein.	Transcription elongation factor.	0.987
A0A317XEZ2	A0A317XV28	A0A317XEZ2	A0A317XV28	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999
A0A317XEZ2	A0A317XW55	A0A317XEZ2	A0A317XW55	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.932
A0A317XEZ2	A0A317XX99	A0A317XEZ2	A0A317XX99	RPOL4c domain-containing protein.	Putative Rpo26-18kD subunit of DNA-directed RNA polymerases I, II, III.	0.999
A0A317XEZ2	A0A317XYC7	A0A317XEZ2	A0A317XYC7	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.950