(12 nodes) Structural constituent of ribosome network (Bradyrhizobium sp. OK095)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplI	LSU ribosomal protein L9P; Binds to the 23S rRNA. (201 aa)
	rpsR	SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (79 aa)
	rpsF	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. (170 aa)
	rpmF	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. (60 aa)
	rpmI	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. (66 aa)
	rplT	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
	rplS	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (127 aa)
	rpsP	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. (110 aa)
	rpmA	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. (89 aa)
	rplU	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (130 aa)
	rpsI	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (159 aa)
	rplL	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (123 aa)

Your Current Organism:

Bradyrhizobium sp. OK095

NCBI taxonomy Id: 1882760
Other names: B. sp. OK095

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplI	rplL	SAMN05443254_103435	SAMN05443254_12117	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.997
rplI	rplS	SAMN05443254_103435	SAMN05443254_105347	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.996
rplI	rplT	SAMN05443254_103435	SAMN05443254_105115	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
rplI	rplU	SAMN05443254_103435	SAMN05443254_105417	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplI	rpmA	SAMN05443254_103435	SAMN05443254_105416	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.996
rplI	rpmF	SAMN05443254_103435	SAMN05443254_10456	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.994
rplI	rpmI	SAMN05443254_103435	SAMN05443254_105114	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.995
rplI	rpsF	SAMN05443254_103435	SAMN05443254_103438	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.998
rplI	rpsI	SAMN05443254_103435	SAMN05443254_107401	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.996
rplI	rpsP	SAMN05443254_103435	SAMN05443254_105350	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.996
rplI	rpsR	SAMN05443254_103435	SAMN05443254_103437	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.998
rplL	rplI	SAMN05443254_12117	SAMN05443254_103435	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L9P; Binds to the 23S rRNA.	0.997
rplL	rplS	SAMN05443254_12117	SAMN05443254_105347	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplL	rplT	SAMN05443254_12117	SAMN05443254_105115	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
rplL	rplU	SAMN05443254_12117	SAMN05443254_105417	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplL	rpmA	SAMN05443254_12117	SAMN05443254_105416	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplL	rpmF	SAMN05443254_12117	SAMN05443254_10456	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.996
rplL	rpmI	SAMN05443254_12117	SAMN05443254_105114	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.995
rplL	rpsF	SAMN05443254_12117	SAMN05443254_103438	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.996
rplL	rpsI	SAMN05443254_12117	SAMN05443254_107401	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.997