STRINGSTRING
Z169_03980 Z169_03980 ETF1 ETF1 Z169_01231 Z169_01231 Z169_06177 Z169_06177 EIF4A3 EIF4A3 SYNCRIP SYNCRIP HNRNPLL HNRNPLL CLUH CLUH Z169_15196 Z169_15196 LIN28B LIN28B G3BP1 G3BP1 EIF3D EIF3D Z169_02417 Z169_02417 Z169_11281 Z169_11281 Z169_04004 Z169_04004 Z169_04779 Z169_04779 PTBP2 PTBP2 Z169_09801 Z169_09801 Z169_05866 Z169_05866 RBFOX2 RBFOX2 Z169_12104 Z169_12104 RC3H2 RC3H2 YTHDC1 YTHDC1 CCRN4L CCRN4L DDX6 DDX6 SLC4A1AP SLC4A1AP CPEB4 CPEB4 NCBP1 NCBP1 Z169_01274 Z169_01274 Z169_08289 Z169_08289 SNRPC SNRPC DAZL DAZL KIAA0430 KIAA0430 RSL1D1 RSL1D1 CARHSP1 CARHSP1 PUM2 PUM2 EIF4ENIF1 EIF4ENIF1 Z169_02755 Z169_02755 CPEB1 CPEB1 RBM15 RBM15 Z169_00595 Z169_00595 SRSF4 SRSF4 PUM1 PUM1 PARK7 PARK7 NUP98 NUP98 Z169_14243 Z169_14243 SLX4IP SLX4IP SPEN SPEN SHMT1 SHMT1 PPIE PPIE FUBP1 FUBP1 LIN28A LIN28A STRAP STRAP ACO1 ACO1 NSRP1 NSRP1 METTL14 METTL14 ZFP36L1 ZFP36L1 PCBP3 PCBP3 GEMIN5 GEMIN5 LUC7L LUC7L CELF2 CELF2 Z169_10657 Z169_10657 LARP1 LARP1 Z169_07165 Z169_07165 Z169_08812 Z169_08812 EIF4A2 EIF4A2 Z169_14729 Z169_14729 SRBD1 SRBD1 YTHDF3 YTHDF3 PTBP3 PTBP3 SRSF5 SRSF5 DHX36 DHX36 SLBP SLBP RBM44 RBM44 EIF2A EIF2A ZC3H12B ZC3H12B MRPL13 MRPL13 UTP23 UTP23 FYTTD1 FYTTD1 Z169_05578 Z169_05578 RPS3A RPS3A MRPS11 MRPS11 THOC2 THOC2 RBMS3 RBMS3 CRYZ CRYZ Z169_03001 Z169_03001 Z169_09709 Z169_09709 RPS13 RPS13 WDR25 WDR25 Z169_03619 Z169_03619 DDX5 DDX5 LSM14A LSM14A TIA1 TIA1 ESRP2 ESRP2 FMR1 FMR1 ELAVL1 ELAVL1 N4BP1 N4BP1 Z169_09766 Z169_09766 NCBP2 NCBP2 Z169_12603 Z169_12603 TPR TPR PABPC1 PABPC1 IGF2BP3 IGF2BP3 PABPC1L PABPC1L A1CF A1CF LUC7L3 LUC7L3 DCP1A DCP1A GNL3 GNL3 Z169_09173 Z169_09173 AQR AQR HRSP12 HRSP12 ESRP1 ESRP1 BTG4 BTG4 ZC3H12A ZC3H12A PIWIL1 PIWIL1 CCT5 CCT5 Z169_14158 Z169_14158 KHDRBS2 KHDRBS2 Z169_08875 Z169_08875 SSB SSB EEFSEC EEFSEC RBM15B RBM15B PCBP4 PCBP4 TXNDC11 TXNDC11 RPL5 RPL5 Z169_10338 Z169_10338 EIF3A EIF3A Z169_09942 Z169_09942 ARC ARC DAZAP1 DAZAP1 TIAL1 TIAL1 SRSF6 SRSF6 RBFOX1 RBFOX1 Z169_13407 Z169_13407 LRPPRC LRPPRC RPL24 RPL24 DHFR DHFR LAMC1 LAMC1 RC3H1 RC3H1 LARP4B LARP4B EXOSC9 EXOSC9 Z169_14619 Z169_14619 FXR1 FXR1 RPL35 RPL35 CSDC2 CSDC2 Z169_12107 Z169_12107 NUDT21 NUDT21 RBMS1 RBMS1 Z169_14590 Z169_14590 CPEB3 CPEB3 Z169_09069 Z169_09069 ZC3H12C ZC3H12C SNRNP35 SNRNP35 Z169_01680 Z169_01680 KHDRBS3 KHDRBS3 CELF6 CELF6 EDC3 EDC3 Z169_06577 Z169_06577 Z169_00272 Z169_00272 Z169_00936 Z169_00936 Z169_11683 Z169_11683 Z169_03662 Z169_03662 MSI1 MSI1 IGF2BP2 IGF2BP2 MYEF2 MYEF2 HDLBP HDLBP Z169_10736 Z169_10736 RBM20 RBM20 SF3B1 SF3B1 YTHDF1 YTHDF1 DHX33 DHX33 RBPMS2 RBPMS2 G3BP2 G3BP2 CDC40 CDC40 STAU1 STAU1 Z169_11704 Z169_11704 TRA2B TRA2B RPS3 RPS3 YTHDF2 YTHDF2 HNRNPR HNRNPR TARDBP TARDBP C1QBP C1QBP EIF4G3 EIF4G3 LARP4 LARP4 Z169_00628 Z169_00628 ANGEL2 ANGEL2 Z169_08697 Z169_08697 RBM25 RBM25 RAVER2 RAVER2 XPO5 XPO5 RBM46 RBM46 CELF1 CELF1 TDRD7 TDRD7 CSTF3 CSTF3 Z169_03500 Z169_03500 ZC3H12D ZC3H12D
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Z169_03980Serine/arginine-rich splicing factor 4. (256 aa)
ETF1Eukaryotic peptide chain release factor subunit 1. (408 aa)
Z169_01231RNA-binding protein Musashi 2. (165 aa)
Z169_0617740S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (143 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (350 aa)
SYNCRIPHeterogeneous nuclear ribonucleoprotein Q. (426 aa)
HNRNPLLHeterogeneous nuclear ribonucleoprotein L-like. (487 aa)
CLUHClustered mitochondria protein; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria; Belongs to the CLU family. (1298 aa)
Z169_15196RNA-binding protein with multiple splicing. (176 aa)
LIN28BProtein lin-28 B. (249 aa)
G3BP1Ras GTPase-activating protein-binding protein 1. (464 aa)
EIF3DEukaryotic translation initiation factor 3 subunit D; Belongs to the eIF-3 subunit D family. (544 aa)
Z169_02417Cytoplasmic polyadenylation element-binding protein 2. (479 aa)
Z169_11281Uncharacterized protein. (256 aa)
Z169_04004Pre-mRNA cleavage complex 2 protein Pcf11. (1467 aa)
Z169_04779Cleavage stimulation factor subunit 2. (535 aa)
PTBP2Polypyrimidine tract-binding protein 2. (519 aa)
Z169_09801Exosome complex component RRP43. (272 aa)
Z169_05866Polypyrimidine tract-binding protein 1. (509 aa)
RBFOX2RNA binding protein fox-1 2. (301 aa)
Z169_12104Polymerase delta-interacting protein 3. (399 aa)
RC3H2Roquin-2. (1191 aa)
YTHDC1YTH domain-containing protein 1. (695 aa)
CCRN4LNocturnin. (368 aa)
DDX6Putative ATP-dependent RNA helicase DDX6. (483 aa)
SLC4A1APKanadaptin. (501 aa)
CPEB4Cytoplasmic polyadenylation element-binding protein 4. (736 aa)
NCBP1Nuclear cap-binding protein subunit 1. (784 aa)
Z169_01274Cleavage and polyadenylation specificity factor subunit 7. (406 aa)
Z169_08289Ribosomal_S7 domain-containing protein. (215 aa)
SNRPCU1 small nuclear ribonucleoprotein C. (159 aa)
DAZLDeleted in azoospermia-like. (289 aa)
KIAA0430Meiosis arrest female protein 1. (1744 aa)
RSL1D1Ribosomal L1 domain-containing protein 1. (239 aa)
CARHSP1Calcium-regulated heat stable protein 1. (152 aa)
PUM2Pumilio 2. (1046 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E transporter. (972 aa)
Z169_02755Protein LSM14 B. (348 aa)
CPEB1Cytoplasmic polyadenylation element-binding protein 1. (565 aa)
RBM15Putative RNA-binding protein 15. (582 aa)
Z169_00595TATA-binding protein-associated factor 2N. (430 aa)
SRSF4Serine/arginine-rich splicing factor 4. (446 aa)
PUM1Pumilio 1. (1018 aa)
PARK7Protein DJ-1. (189 aa)
NUP98Nuclear pore complex protein Nup98-Nup96. (1730 aa)
Z169_14243Cleavage and polyadenylation specificity factor subunit 6. (447 aa)
SLX4IPProtein SLX4IP. (413 aa)
SPENMsx2-interacting protein. (112 aa)
SHMT1Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (485 aa)
PPIEPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
FUBP1Far upstream element-binding protein 1. (591 aa)
LIN28AProtein lin-28 A. (134 aa)
STRAPSerine-threonine kinase receptor-associated protein. (320 aa)
ACO1Cytoplasmic aconitate hydratase; Belongs to the aconitase/IPM isomerase family. (889 aa)
NSRP1Nuclear speckle splicing regulatory protein 1. (547 aa)
METTL14Methyltransferase-like 14; Belongs to the MT-A70-like family. (438 aa)
ZFP36L1Zinc finger protein 36, C3H1 type-like 1. (165 aa)
PCBP3Poly(RC)-binding protein 3. (341 aa)
GEMIN5Gem-associated protein 5. (1417 aa)
LUC7LPutative RNA-binding protein Luc7-like 1. (350 aa)
CELF2CUGBP Elav-like family member 2. (494 aa)
Z169_10657Uncharacterized protein. (54 aa)
LARP1La-related protein 1. (926 aa)
Z169_07165Protein Smaug 1. (703 aa)
Z169_08812C->U-editing enzyme APOBEC-1. (142 aa)
EIF4A2Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family. (407 aa)
Z169_14729CUGBP Elav-like family member 4. (361 aa)
SRBD1S1 RNA-binding domain-containing protein 1. (1000 aa)
YTHDF3YTH domain family protein 3. (560 aa)
PTBP3Polypyrimidine tract-binding protein 3. (510 aa)
SRSF5Serine/arginine-rich splicing factor 5. (252 aa)
DHX36Putative ATP-dependent RNA helicase DHX36. (910 aa)
SLBPHistone RNA hairpin-binding protein. (260 aa)
RBM44RNA-binding protein 44. (80 aa)
EIF2AEukaryotic translation initiation factor 2A. (579 aa)
ZC3H12BPutative ribonuclease ZC3H12B. (296 aa)
MRPL13Uncharacterized protein. (69 aa)
UTP23rRNA-processing protein UTP23. (187 aa)
FYTTD1UAP56-interacting factor. (273 aa)
Z169_05578Double-stranded RNA-binding protein Staufen 2. (570 aa)
RPS3A40S ribosomal protein S3a. (243 aa)
MRPS11Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (132 aa)
THOC2THO complex subunit 2. (1510 aa)
RBMS3RNA-binding motif, single-stranded-interacting protein 3. (395 aa)
CRYZQuinone oxidoreductase. (330 aa)
Z169_03001Plasminogen activator inhibitor 1 RNA-binding protein. (298 aa)
Z169_09709La-related protein 6. (175 aa)
RPS1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (143 aa)
WDR25WD repeat-containing protein 25. (327 aa)
Z169_03619Histone RNA hairpin-binding protein. (198 aa)
DDX5Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (592 aa)
LSM14AProtein LSM14 A. (455 aa)
TIA1Nucleolysin TIA-1 isoform p40. (361 aa)
ESRP2Epithelial splicing regulatory protein 2. (618 aa)
FMR1Fragile X mental retardation protein 1 B. (549 aa)
ELAVL1ELAV-like protein; Belongs to the RRM elav family. (326 aa)
N4BP1NEDD4-binding protein 1. (850 aa)
Z169_09766CUGBP Elav-like family member 5. (398 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (108 aa)
Z169_12603Cellular nucleic acid-binding protein. (170 aa)
TPRNucleoprotein TPR. (2316 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (573 aa)
IGF2BP3Insulin-like growth factor 2 mRNA-binding protein 3. (584 aa)
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (640 aa)
A1CFAPOBEC1 complementation factor. (603 aa)
LUC7L3Luc7-like 3. (399 aa)
DCP1AmRNA-decapping enzyme 1A. (538 aa)
GNL3Guanine nucleotide-binding protein-like 3. (553 aa)
Z169_09173Selenocysteine insertion sequence-binding protein 2. (856 aa)
AQRIntron-binding protein aquarius. (1370 aa)
HRSP12Ribonuclease UK114. (115 aa)
ESRP1Epithelial splicing regulatory protein 1. (596 aa)
BTG4Maternal B9.15 protein. (229 aa)
ZC3H12ARibonuclease ZC3H12A. (481 aa)
PIWIL1Piwi-like 1; Belongs to the argonaute family. (858 aa)
CCT5T-complex protein 1 subunit epsilon; Belongs to the TCP-1 chaperonin family. (506 aa)
Z169_14158Smad nuclear-interacting protein 1. (285 aa)
KHDRBS2KH domain-containing, RNA-binding, signal transduction-associated protein 2. (275 aa)
Z169_08875Piwi-like 2. (458 aa)
SSBLupus La protein. (407 aa)
EEFSECSelenocysteine-specific elongation factor. (490 aa)
RBM15BPutative RNA-binding protein 15B. (557 aa)
PCBP4Poly(RC)-binding protein 4. (304 aa)
TXNDC11Thioredoxin domain-containing protein 11. (869 aa)
RPL560S ribosomal protein L5. (296 aa)
Z169_10338Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (63 aa)
EIF3AEukaryotic translation initiation factor 3 subunit A. (1347 aa)
Z169_09942Poly(RC)-binding protein 3. (306 aa)
ARCActivity-regulated cytoskeleton-associated protein. (395 aa)
DAZAP1DAZ-associated protein 1. (398 aa)
TIAL1Nucleolysin TIAR. (389 aa)
SRSF6Serine/arginine-rich splicing factor 6. (265 aa)
RBFOX1RNA binding protein fox-1 1. (390 aa)
Z169_13407Pumilio domain-containing protein KIAA0020. (596 aa)
LRPPRCUncharacterized protein. (1340 aa)
RPL2460S ribosomal protein L24. (131 aa)
DHFRDihydrofolate reductase. (143 aa)
LAMC1ATP-dependent RNA helicase A. (366 aa)
RC3H1Roquin-1. (1133 aa)
LARP4BLa-related protein 4B. (701 aa)
EXOSC9Exosome complex component RRP45. (395 aa)
Z169_14619THO complex subunit 5. (675 aa)
FXR1Fragile X mental retardation syndrome-related protein 1. (644 aa)
RPL3560S ribosomal protein L35. (76 aa)
CSDC2Cold shock domain-containing protein C2. (89 aa)
Z169_12107Putative RNA-binding protein Luc7-like 2. (315 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5. (174 aa)
RBMS1RNA-binding motif, single-stranded-interacting protein 1. (379 aa)
Z169_14590Serine/arginine repetitive matrix protein 4. (575 aa)
CPEB3Cytoplasmic polyadenylation element-binding protein 3. (679 aa)
Z169_09069Uncharacterized protein C12orf50. (121 aa)
ZC3H12CPutative ribonuclease ZC3H12C. (292 aa)
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (242 aa)
Z169_01680Protein CASC3. (510 aa)
KHDRBS3KH domain-containing, RNA-binding, signal transduction-associated protein 3. (316 aa)
CELF6CUGBP Elav-like family member 4. (95 aa)
EDC3Enhancer of mRNA-decapping protein 3. (506 aa)
Z169_06577Iron-responsive element-binding protein 2; Belongs to the aconitase/IPM isomerase family. (883 aa)
Z169_00272KH domain-containing, RNA-binding, signal transduction-associated protein 1. (302 aa)
Z169_00936Poly(RC)-binding protein 2. (249 aa)
Z169_11683Far upstream element-binding protein 3. (508 aa)
Z169_03662ATP-dependent RNA helicase A. (823 aa)
MSI1RNA-binding protein Musashi 1. (327 aa)
IGF2BP2Insulin-like growth factor 2 mRNA-binding protein 2. (486 aa)
MYEF2Myelin expression factor 2. (553 aa)
HDLBPVigilin. (1267 aa)
Z169_10736Density-regulated protein; Belongs to the DENR family. (193 aa)
RBM20RNA-binding protein 20. (151 aa)
SF3B1Splicing factor 3B subunit 1. (1292 aa)
YTHDF1YTH domain family protein 1. (546 aa)
DHX33Putative ATP-dependent RNA helicase DHX33. (612 aa)
RBPMS2RNA-binding protein with multiple splicing. (150 aa)
G3BP2Ras GTPase-activating protein-binding protein 2. (482 aa)
CDC40Pre-mRNA-processing factor 17. (520 aa)
STAU1Double-stranded RNA-binding protein Staufen 1. (694 aa)
Z169_11704Insulin-like growth factor 2 mRNA-binding protein 1. (507 aa)
TRA2BTransformer-2 protein beta. (230 aa)
RPS340S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (234 aa)
YTHDF2YTH domain family protein 2. (518 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (451 aa)
TARDBPTAR DNA-binding protein 43. (414 aa)
C1QBPUncharacterized protein. (202 aa)
EIF4G3Eukaryotic translation initiation factor 4 gamma 3. (1666 aa)
LARP4La-related protein 4. (726 aa)
Z169_00628Uncharacterized protein C17orf85. (582 aa)
ANGEL2Protein angel 2. (559 aa)
Z169_08697RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (152 aa)
RBM25RNA-binding protein 25. (809 aa)
RAVER2Ribonucleoprotein PTB-binding 2. (606 aa)
XPO5Exportin-5. (1179 aa)
RBM46Putative RNA-binding protein 46. (467 aa)
CELF1CUGBP Elav-like family member 1. (515 aa)
TDRD7Tudor domain-containing protein 7. (883 aa)
CSTF3Cleavage stimulation factor subunit 3. (708 aa)
Z169_03500CUGBP Elav-like family member 4. (122 aa)
ZC3H12DPutative ribonuclease ZC3H12D. (309 aa)
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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