18 items (Egretta garzetta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ISY1	Pre-mRNA-splicing factor ISY1. (219 aa)
	YTHDC1	YTH domain-containing protein 1. (695 aa)
	Z169_02042	UPF0469 protein KIAA0907. (524 aa)
	LUC7L	Putative RNA-binding protein Luc7-like 1. (350 aa)
	CELF2	CUGBP Elav-like family member 2. (494 aa)
	Z169_14729	CUGBP Elav-like family member 4. (361 aa)
	SETX	Putative helicase senataxin. (2539 aa)
	Z169_09766	CUGBP Elav-like family member 5. (398 aa)
	LUC7L3	Luc7-like 3. (399 aa)
	PSIP1	Lens epithelium-derived growth factor. (541 aa)
	Z169_05458	Splicing factor, suppressor of white-apricot. (926 aa)
	Z169_12107	Putative RNA-binding protein Luc7-like 2. (315 aa)
	CELF6	CUGBP Elav-like family member 4. (95 aa)
	PRPF39	Pre-mRNA-processing factor 39. (626 aa)
	CELF1	CUGBP Elav-like family member 1. (515 aa)
	Z169_03500	CUGBP Elav-like family member 4. (122 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C. (159 aa)
	PTBP2	Polypyrimidine tract-binding protein 2. (519 aa)

Your Current Organism:

Egretta garzetta

NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CELF2	Z169_14729	A0A091IVN4	A0A091IX34	CUGBP Elav-like family member 2.	CUGBP Elav-like family member 4.	0.502
CELF6	Z169_14729	A0A091JGA4	A0A091IX34	CUGBP Elav-like family member 4.	CUGBP Elav-like family member 4.	0.614
LUC7L	LUC7L3	A0A091IVL0	A0A091J5M0	Putative RNA-binding protein Luc7-like 1.	Luc7-like 3.	0.502
LUC7L	PRPF39	A0A091IVL0	A0A091JJ51	Putative RNA-binding protein Luc7-like 1.	Pre-mRNA-processing factor 39.	0.774
LUC7L	SNRPC	A0A091IVL0	A0A091JV67	Putative RNA-binding protein Luc7-like 1.	U1 small nuclear ribonucleoprotein C.	0.921
LUC7L	Z169_02042	A0A091IVL0	A0A091IT94	Putative RNA-binding protein Luc7-like 1.	UPF0469 protein KIAA0907.	0.416
LUC7L3	LUC7L	A0A091J5M0	A0A091IVL0	Luc7-like 3.	Putative RNA-binding protein Luc7-like 1.	0.502
LUC7L3	PRPF39	A0A091J5M0	A0A091JJ51	Luc7-like 3.	Pre-mRNA-processing factor 39.	0.739
LUC7L3	SNRPC	A0A091J5M0	A0A091JV67	Luc7-like 3.	U1 small nuclear ribonucleoprotein C.	0.760
LUC7L3	Z169_02042	A0A091J5M0	A0A091IT94	Luc7-like 3.	UPF0469 protein KIAA0907.	0.575
LUC7L3	Z169_12107	A0A091J5M0	A0A091JEY5	Luc7-like 3.	Putative RNA-binding protein Luc7-like 2.	0.502
PRPF39	LUC7L	A0A091JJ51	A0A091IVL0	Pre-mRNA-processing factor 39.	Putative RNA-binding protein Luc7-like 1.	0.774
PRPF39	LUC7L3	A0A091JJ51	A0A091J5M0	Pre-mRNA-processing factor 39.	Luc7-like 3.	0.739
PRPF39	SNRPC	A0A091JJ51	A0A091JV67	Pre-mRNA-processing factor 39.	U1 small nuclear ribonucleoprotein C.	0.921
PRPF39	Z169_12107	A0A091JJ51	A0A091JEY5	Pre-mRNA-processing factor 39.	Putative RNA-binding protein Luc7-like 2.	0.774
SNRPC	LUC7L	A0A091JV67	A0A091IVL0	U1 small nuclear ribonucleoprotein C.	Putative RNA-binding protein Luc7-like 1.	0.921
SNRPC	LUC7L3	A0A091JV67	A0A091J5M0	U1 small nuclear ribonucleoprotein C.	Luc7-like 3.	0.760
SNRPC	PRPF39	A0A091JV67	A0A091JJ51	U1 small nuclear ribonucleoprotein C.	Pre-mRNA-processing factor 39.	0.921
SNRPC	Z169_12107	A0A091JV67	A0A091JEY5	U1 small nuclear ribonucleoprotein C.	Putative RNA-binding protein Luc7-like 2.	0.921
Z169_02042	LUC7L	A0A091IT94	A0A091IVL0	UPF0469 protein KIAA0907.	Putative RNA-binding protein Luc7-like 1.	0.416