(22 nodes) SAGA-type complex network (Egretta garzetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z169_05059	Mitogen-activated protein kinase kinase kinase 7. (585 aa)
	TADA2A	Transcriptional adapter. (443 aa)
	Z169_16168	Transcriptional adapter 3. (344 aa)
	TAF9B	Transcription initiation factor TFIID subunit 9. (210 aa)
	Z169_02113	DNA polymerase epsilon subunit 3. (97 aa)
	POLE3	DNA polymerase epsilon subunit 3. (121 aa)
	ZZZ3	ZZ-type zinc finger-containing protein 3. (924 aa)
	KAT2A	Histone acetyltransferase KAT2A. (714 aa)
	KAT2B	Histone acetyltransferase KAT2B. (731 aa)
	ENY2	Transcription and mRNA export factor ENY2. (99 aa)
	DR1	Protein Dr1. (131 aa)
	CSRP2BP	Cysteine-rich protein 2-binding protein. (778 aa)
	TADA2B	Transcriptional adapter 2-beta. (330 aa)
	TAF5L	TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L. (589 aa)
	SUPT7L	STAGA complex 65 subunit gamma. (414 aa)
	Z169_15476	Transcription initiation factor TFIID subunit 10. (134 aa)
	TAF12	Transcription initiation factor TFIID subunit 12. (161 aa)
	Z169_05001	Transcription initiation factor TFIID subunit 4. (259 aa)
	MBIP	MAP3K12-binding inhibitory protein 1. (302 aa)
	TAF5	Transcription initiation factor TFIID subunit 5. (611 aa)
	SUPT3H	Transcription initiation protein SPT3. (332 aa)
	TADA1	Transcriptional adapter 1. (311 aa)

Your Current Organism:

Egretta garzetta

NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSRP2BP	DR1	A0A091JEP1	A0A091JA76	Cysteine-rich protein 2-binding protein.	Protein Dr1.	0.840
CSRP2BP	KAT2A	A0A091JEP1	A0A091J3H7	Cysteine-rich protein 2-binding protein.	Histone acetyltransferase KAT2A.	0.753
CSRP2BP	KAT2B	A0A091JEP1	A0A091J555	Cysteine-rich protein 2-binding protein.	Histone acetyltransferase KAT2B.	0.753
CSRP2BP	MBIP	A0A091JEP1	A0A091JR97	Cysteine-rich protein 2-binding protein.	MAP3K12-binding inhibitory protein 1.	0.727
CSRP2BP	TADA2A	A0A091JEP1	A0A091IM30	Cysteine-rich protein 2-binding protein.	Transcriptional adapter.	0.827
CSRP2BP	TADA2B	A0A091JEP1	A0A091JF01	Cysteine-rich protein 2-binding protein.	Transcriptional adapter 2-beta.	0.467
CSRP2BP	Z169_16168	A0A091JEP1	A0A091IPT7	Cysteine-rich protein 2-binding protein.	Transcriptional adapter 3.	0.914
CSRP2BP	ZZZ3	A0A091JEP1	A0A091J2L3	Cysteine-rich protein 2-binding protein.	ZZ-type zinc finger-containing protein 3.	0.945
DR1	CSRP2BP	A0A091JA76	A0A091JEP1	Protein Dr1.	Cysteine-rich protein 2-binding protein.	0.840
DR1	KAT2A	A0A091JA76	A0A091J3H7	Protein Dr1.	Histone acetyltransferase KAT2A.	0.572
DR1	KAT2B	A0A091JA76	A0A091J555	Protein Dr1.	Histone acetyltransferase KAT2B.	0.572
DR1	MBIP	A0A091JA76	A0A091JR97	Protein Dr1.	MAP3K12-binding inhibitory protein 1.	0.829
DR1	POLE3	A0A091JA76	A0A091J223	Protein Dr1.	DNA polymerase epsilon subunit 3.	0.704
DR1	TADA2A	A0A091JA76	A0A091IM30	Protein Dr1.	Transcriptional adapter.	0.843
DR1	TADA2B	A0A091JA76	A0A091JF01	Protein Dr1.	Transcriptional adapter 2-beta.	0.683
DR1	Z169_02113	A0A091JA76	A0A091IYR8	Protein Dr1.	DNA polymerase epsilon subunit 3.	0.704
DR1	Z169_16168	A0A091JA76	A0A091IPT7	Protein Dr1.	Transcriptional adapter 3.	0.754
DR1	ZZZ3	A0A091JA76	A0A091J2L3	Protein Dr1.	ZZ-type zinc finger-containing protein 3.	0.700
ENY2	KAT2A	A0A091J791	A0A091J3H7	Transcription and mRNA export factor ENY2.	Histone acetyltransferase KAT2A.	0.915
ENY2	KAT2B	A0A091J791	A0A091J555	Transcription and mRNA export factor ENY2.	Histone acetyltransferase KAT2B.	0.915