(77 nodes) RNA polymerase complex network (Egretta garzetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	POLR2D	DNA-directed RNA polymerase II subunit RPB4. (118 aa)
	LAP3	Cytosol aminopeptidase. (486 aa)
	DHX57	Putative ATP-dependent RNA helicase DHX57. (1325 aa)
	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2. (1132 aa)
	GTF2H1	General transcription factor IIH subunit 1. (548 aa)
	Z169_05001	Transcription initiation factor TFIID subunit 4. (259 aa)
	POLR3C	DNA-directed RNA polymerase III subunit RPC3. (51 aa)
	POLRMT	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (957 aa)
	CINP	Cyclin-dependent kinase 2-interacting protein. (209 aa)
	CDK7	Cyclin-dependent kinase 7. (316 aa)
	ERCC3	TFIIH basal transcription factor complex helicase XPB subunit. (705 aa)
	RECQL5	ATP-dependent DNA helicase Q5. (1009 aa)
	TAF5	Transcription initiation factor TFIID subunit 5. (611 aa)
	TWISTNB	DNA-directed RNA polymerase I subunit RPA43. (249 aa)
	SUPT3H	Transcription initiation protein SPT3. (332 aa)
	Z169_05213	Reverse transcriptase domain-containing protein. (241 aa)
	Z169_09543	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (190 aa)
	Z169_01808	Reverse transcriptase domain-containing protein. (214 aa)
	POLR1B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1020 aa)
	Z169_11230	General transcription factor IIE subunit 1. (392 aa)
	Z169_06351	DNA-directed RNA polymerase I subunit RPA49. (382 aa)
	GTF2H3	General transcription factor IIH subunit 3. (305 aa)
	WDR61	WD repeat-containing protein 61. (301 aa)
	POLR1D	Uncharacterized protein. (120 aa)
	TAF4B	Transcription initiation factor TFIID subunit 4B. (650 aa)
	Z169_00583	Ras GTPase-activating protein 4. (566 aa)
	GTF2F2	General transcription factor IIF subunit 2. (240 aa)
	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B. (274 aa)
	POLR2B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1168 aa)
	Z169_03723	Reverse transcriptase domain-containing protein. (226 aa)
	MNAT1	CDK-activating kinase assembly factor MAT1. (279 aa)
	Z169_05564	Reverse transcriptase domain-containing protein. (214 aa)
	GTF2H5	General transcription factor IIH subunit 5. (59 aa)
	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3. (126 aa)
	GTF2A2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	POLR2I	DNA-directed RNA polymerase II subunit RPB9; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (105 aa)
	Z169_00582	DNA-directed RNA polymerase II subunit RPB11-a. (100 aa)
	Z169_15973	Reverse transcriptase domain-containing protein. (221 aa)
	TAF5L	TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L. (589 aa)
	Z169_06690	RNA polymerase-associated protein LEO1. (627 aa)
	POLR2C	DNA-directed RNA polymerase II subunit RPB3. (248 aa)
	Z169_12683	Uncharacterized protein. (195 aa)
	POLR3F	DNA-directed RNA polymerase III subunit RPC6. (296 aa)
	Z169_01822	DNA-directed RNA polymerase III subunit RPC7. (212 aa)
	RPAP2	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2. (569 aa)
	POLR3A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1375 aa)
	RTF1	RNA polymerase-associated protein RTF1. (641 aa)
	PRIM2	DNA primase large subunit. (491 aa)
	Z169_04873	DNA-directed RNA polymerases I and III subunit RPAC2. (96 aa)
	RPAP1	RNA polymerase II-associated protein 1. (1422 aa)
	Z169_14056	Reverse transcriptase domain-containing protein. (237 aa)
	RPRD1A	Regulation of nuclear pre-mRNA domain-containing protein 1A. (261 aa)
	TAF13	Transcription initiation factor TFIID subunit 13. (111 aa)
	TAF11	Transcription initiation factor TFIID subunit 11. (142 aa)
	Z169_16480	Serine incorporator 4. (295 aa)
	SERINC5	Serine incorporator 5. (454 aa)
	TAF8	Transcription initiation factor TFIID subunit 8. (290 aa)
	Z169_02591	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (54 aa)
	Z169_10281	Reverse transcriptase domain-containing protein. (244 aa)
	POLA1	DNA polymerase. (1461 aa)
	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1. (282 aa)
	Z169_01510	Reverse transcriptase domain-containing protein. (244 aa)
	WDR47	WD repeat-containing protein 47. (916 aa)
	PEX2	Peroxisome biogenesis factor 2. (303 aa)
	TAF9B	Transcription initiation factor TFIID subunit 9. (210 aa)
	CTR9	RNA polymerase-associated protein CTR9. (1141 aa)
	POLR3B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1113 aa)
	TAF7L	Transcription initiation factor TFIID subunit 7. (336 aa)
	POLR1A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1665 aa)
	GTF2H2	General transcription factor IIH subunit. (403 aa)
	POLR3E	DNA-directed RNA polymerase III subunit RPC5. (690 aa)
	TAF3	Transcription initiation factor TFIID subunit 3. (873 aa)
	GTF2E2	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (291 aa)
	POLR3H	DNA-directed RNA polymerase III subunit RPC8. (206 aa)
	POLR2F	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (121 aa)
	Z169_14079	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	Z169_12028	UPF0193 protein EVG1. (189 aa)

Your Current Organism:

Egretta garzetta

NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK7	ERCC3	A0A091JSU8	A0A091JSX6	Cyclin-dependent kinase 7.	TFIIH basal transcription factor complex helicase XPB subunit.	0.984
CDK7	GTF2A2	A0A091JSU8	A0A091JJP6	Cyclin-dependent kinase 7.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.857
CDK7	GTF2E2	A0A091JSU8	A0A091ISB5	Cyclin-dependent kinase 7.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.993
CDK7	GTF2F2	A0A091JSU8	A0A091JMC4	Cyclin-dependent kinase 7.	General transcription factor IIF subunit 2.	0.862
CDK7	GTF2H1	A0A091JSU8	A0A091JN38	Cyclin-dependent kinase 7.	General transcription factor IIH subunit 1.	0.979
CDK7	GTF2H2	A0A091JSU8	A0A091ITW9	Cyclin-dependent kinase 7.	General transcription factor IIH subunit.	0.985
CDK7	GTF2H3	A0A091JSU8	A0A091K6X6	Cyclin-dependent kinase 7.	General transcription factor IIH subunit 3.	0.997
CDK7	GTF2H5	A0A091JSU8	A0A091JKT8	Cyclin-dependent kinase 7.	General transcription factor IIH subunit 5.	0.972
CDK7	MNAT1	A0A091JSU8	A0A091JLE5	Cyclin-dependent kinase 7.	CDK-activating kinase assembly factor MAT1.	0.998
CDK7	POLR1A	A0A091JSU8	A0A091IUQ1	Cyclin-dependent kinase 7.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.673
CDK7	POLR1B	A0A091JSU8	A0A091K3K3	Cyclin-dependent kinase 7.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.763
CDK7	POLR1C	A0A091JSU8	A0A091J066	Cyclin-dependent kinase 7.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.857
CDK7	POLR2B	A0A091JSU8	A0A091JLQ9	Cyclin-dependent kinase 7.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.876
CDK7	POLR2C	A0A091JSU8	A0A091JGI0	Cyclin-dependent kinase 7.	DNA-directed RNA polymerase II subunit RPB3.	0.928
CDK7	POLR2D	A0A091JSU8	A0A091JYB6	Cyclin-dependent kinase 7.	DNA-directed RNA polymerase II subunit RPB4.	0.946
CDK7	POLR2F	A0A091JSU8	A0A091IRM5	Cyclin-dependent kinase 7.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.890
CDK7	POLR2H	A0A091JSU8	A0A091JKN4	Cyclin-dependent kinase 7.	DNA-directed RNA polymerases I, II, and III subunit RPABC3.	0.855
CDK7	POLR2I	A0A091JSU8	A0A091JJG0	Cyclin-dependent kinase 7.	DNA-directed RNA polymerase II subunit RPB9; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.856
CDK7	POLR3B	A0A091JSU8	A0A091IVR5	Cyclin-dependent kinase 7.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.660
CDK7	RPAP2	A0A091JSU8	A0A091JCR8	Cyclin-dependent kinase 7.	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2.	0.523