(17 nodes) Sm domain network (Egretta garzetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM7	U6 snRNA-associated Sm-like LSm7. (101 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	Z169_08664	Small nuclear ribonucleoprotein-associated protein B. (236 aa)
	EDC3	Enhancer of mRNA-decapping protein 3. (506 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	LSM6	U6 snRNA-associated Sm-like LSm6. (80 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (85 aa)
	SNRPF	Small nuclear ribonucleoprotein F. (53 aa)
	SNRPG	Small nuclear ribonucleoprotein G. (62 aa)
	LSM11	U7 snRNA-associated Sm-like LSm11. (209 aa)
	Z169_08401	Ataxin-2. (1017 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (76 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	LSM14A	Protein LSM14 A. (455 aa)
	SNRPE	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (74 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (104 aa)

Your Current Organism:

Egretta garzetta

NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDC3	LSM1	A0A091JGC2	A0A091J706	Enhancer of mRNA-decapping protein 3.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.873
EDC3	LSM14A	A0A091JGC2	A0A091J1G4	Enhancer of mRNA-decapping protein 3.	Protein LSM14 A.	0.827
EDC3	LSM3	A0A091JGC2	A0A091J8Y1	Enhancer of mRNA-decapping protein 3.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.843
EDC3	LSM4	A0A091JGC2	A0A091JIN6	Enhancer of mRNA-decapping protein 3.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.898
EDC3	LSM5	A0A091JGC2	A0A091IZZ0	Enhancer of mRNA-decapping protein 3.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.768
EDC3	LSM6	A0A091JGC2	A0A091JJM7	Enhancer of mRNA-decapping protein 3.	U6 snRNA-associated Sm-like LSm6.	0.674
EDC3	LSM7	A0A091JGC2	A0A091J8J7	Enhancer of mRNA-decapping protein 3.	U6 snRNA-associated Sm-like LSm7.	0.800
EDC3	LSM8	A0A091JGC2	A0A091JNL9	Enhancer of mRNA-decapping protein 3.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.478
EDC3	Z169_08401	A0A091JGC2	A0A091IWG7	Enhancer of mRNA-decapping protein 3.	Ataxin-2.	0.547
LSM1	EDC3	A0A091J706	A0A091JGC2	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Enhancer of mRNA-decapping protein 3.	0.873
LSM1	LSM14A	A0A091J706	A0A091J1G4	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Protein LSM14 A.	0.567
LSM1	LSM3	A0A091J706	A0A091J8Y1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM1	LSM4	A0A091J706	A0A091JIN6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM1	LSM5	A0A091J706	A0A091IZZ0	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.998
LSM1	LSM6	A0A091J706	A0A091JJM7	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like LSm6.	0.998
LSM1	LSM7	A0A091J706	A0A091J8J7	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like LSm7.	0.998
LSM1	LSM8	A0A091J706	A0A091JNL9	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.976
LSM1	SNRPD1	A0A091J706	A0A091J0K5	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.731
LSM1	SNRPD3	A0A091J706	A0A091JIC5	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Small nuclear ribonucleoprotein Sm D3.	0.707
LSM1	SNRPE	A0A091J706	A0A091J6N6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.758