9 items (Egretta garzetta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACAT1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (405 aa)
	ACSS3	Uncharacterized protein. (583 aa)
	BDH2	3-hydroxybutyrate dehydrogenase type 2. (221 aa)
	HMGCLL1	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic. (307 aa)
	BDH1	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (343 aa)
	Z169_10195	Uncharacterized protein. (218 aa)
	AACS	Acetoacetyl-CoA synthetase. (638 aa)
	HMGCL	Pyruvate carboxyltransferase domain-containing protein. (277 aa)
	Z169_07566	ADP-ribosylation factor-like 9; Belongs to the small GTPase superfamily. Arf family. (173 aa)

Your Current Organism:

Egretta garzetta

NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AACS	ACAT1	A0A091JIF5	A0A091JIA7	Acetoacetyl-CoA synthetase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.958
AACS	BDH1	A0A091JIF5	A0A091J6S8	Acetoacetyl-CoA synthetase.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.910
AACS	BDH2	A0A091JIF5	A0A091JA41	Acetoacetyl-CoA synthetase.	3-hydroxybutyrate dehydrogenase type 2.	0.924
AACS	HMGCL	A0A091JIF5	A0A091ITF2	Acetoacetyl-CoA synthetase.	Pyruvate carboxyltransferase domain-containing protein.	0.948
AACS	HMGCLL1	A0A091JIF5	A0A091JWQ8	Acetoacetyl-CoA synthetase.	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic.	0.948
ACAT1	AACS	A0A091JIA7	A0A091JIF5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acetoacetyl-CoA synthetase.	0.958
ACAT1	ACSS3	A0A091JIA7	A0A091JM95	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.528
ACAT1	BDH1	A0A091JIA7	A0A091J6S8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.452
ACAT1	HMGCL	A0A091JIA7	A0A091ITF2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Pyruvate carboxyltransferase domain-containing protein.	0.941
ACAT1	HMGCLL1	A0A091JIA7	A0A091JWQ8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic.	0.941
ACAT1	Z169_10195	A0A091JIA7	A0A091KEI4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.452
ACSS3	ACAT1	A0A091JM95	A0A091JIA7	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.528
ACSS3	HMGCL	A0A091JM95	A0A091ITF2	Uncharacterized protein.	Pyruvate carboxyltransferase domain-containing protein.	0.429
ACSS3	HMGCLL1	A0A091JM95	A0A091JWQ8	Uncharacterized protein.	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic.	0.429
BDH1	AACS	A0A091J6S8	A0A091JIF5	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Acetoacetyl-CoA synthetase.	0.910
BDH1	ACAT1	A0A091J6S8	A0A091JIA7	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.452
BDH1	BDH2	A0A091J6S8	A0A091JA41	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	3-hydroxybutyrate dehydrogenase type 2.	0.928
BDH1	HMGCL	A0A091J6S8	A0A091ITF2	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Pyruvate carboxyltransferase domain-containing protein.	0.925
BDH1	HMGCLL1	A0A091J6S8	A0A091JWQ8	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic.	0.925
BDH2	AACS	A0A091JA41	A0A091JIF5	3-hydroxybutyrate dehydrogenase type 2.	Acetoacetyl-CoA synthetase.	0.924