20 items (Egretta garzetta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HADHA	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (668 aa)
	HMGCS1	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (525 aa)
	HMGCL	Pyruvate carboxyltransferase domain-containing protein. (277 aa)
	L2HGDH	DAO domain-containing protein. (392 aa)
	HADH	Uncharacterized protein. (271 aa)
	Z169_06906	Uncharacterized protein. (543 aa)
	Z169_06908	Uncharacterized protein. (567 aa)
	GAD2	Glutamate decarboxylase 2. (491 aa)
	ACAT2	Acetyl-CoA acetyltransferase, cytosolic; Belongs to the thiolase-like superfamily. Thiolase family. (334 aa)
	ALDH5A1	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (389 aa)
	BDH1	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (343 aa)
	GAD1	Glutamate decarboxylase 1. (493 aa)
	BDH2	3-hydroxybutyrate dehydrogenase type 2. (221 aa)
	Z169_10343	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (186 aa)
	ACADS	Uncharacterized protein. (397 aa)
	ACAT1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (405 aa)
	AACS	Acetoacetyl-CoA synthetase. (638 aa)
	EHHADH	Peroxisomal bifunctional enzyme. (461 aa)
	HMGCLL1	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic. (307 aa)
	OXCT1	Uncharacterized protein. (480 aa)

Your Current Organism:

Egretta garzetta

NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AACS	ACAT1	A0A091JIF5	A0A091JIA7	Acetoacetyl-CoA synthetase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.958
AACS	ACAT2	A0A091JIF5	A0A091J0U8	Acetoacetyl-CoA synthetase.	Acetyl-CoA acetyltransferase, cytosolic; Belongs to the thiolase-like superfamily. Thiolase family.	0.950
AACS	ALDH5A1	A0A091JIF5	A0A091J613	Acetoacetyl-CoA synthetase.	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.532
AACS	BDH1	A0A091JIF5	A0A091J6S8	Acetoacetyl-CoA synthetase.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.910
AACS	BDH2	A0A091JIF5	A0A091JA41	Acetoacetyl-CoA synthetase.	3-hydroxybutyrate dehydrogenase type 2.	0.924
AACS	EHHADH	A0A091JIF5	A0A091JLH7	Acetoacetyl-CoA synthetase.	Peroxisomal bifunctional enzyme.	0.937
AACS	HADH	A0A091JIF5	A0A091IVI7	Acetoacetyl-CoA synthetase.	Uncharacterized protein.	0.955
AACS	HMGCL	A0A091JIF5	A0A091ITF2	Acetoacetyl-CoA synthetase.	Pyruvate carboxyltransferase domain-containing protein.	0.948
AACS	HMGCLL1	A0A091JIF5	A0A091JWQ8	Acetoacetyl-CoA synthetase.	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic.	0.948
AACS	HMGCS1	A0A091JIF5	A0A091IT83	Acetoacetyl-CoA synthetase.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.940
AACS	OXCT1	A0A091JIF5	A0A091KH83	Acetoacetyl-CoA synthetase.	Uncharacterized protein.	0.919
AACS	Z169_10343	A0A091JIF5	A0A091JAF2	Acetoacetyl-CoA synthetase.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.901
ACADS	ACAT1	A0A091JHR9	A0A091JIA7	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.954
ACADS	ACAT2	A0A091JHR9	A0A091J0U8	Uncharacterized protein.	Acetyl-CoA acetyltransferase, cytosolic; Belongs to the thiolase-like superfamily. Thiolase family.	0.954
ACADS	EHHADH	A0A091JHR9	A0A091JLH7	Uncharacterized protein.	Peroxisomal bifunctional enzyme.	0.961
ACADS	HADH	A0A091JHR9	A0A091IVI7	Uncharacterized protein.	Uncharacterized protein.	0.957
ACADS	HADHA	A0A091JHR9	A0A091IQQ0	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.972
ACADS	OXCT1	A0A091JHR9	A0A091KH83	Uncharacterized protein.	Uncharacterized protein.	0.476
ACADS	Z169_06906	A0A091JHR9	A0A091IVX6	Uncharacterized protein.	Uncharacterized protein.	0.940
ACADS	Z169_06908	A0A091JHR9	A0A091IWB4	Uncharacterized protein.	Uncharacterized protein.	0.941