(25 nodes) Plasma membrane protein complex network (Selenomonas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOH47252.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MlaE permease family. (255 aa)
	AOH47253.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AOH47428.1	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	nuoB	NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (179 aa)
	AOH47547.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	nuoK	NADH-quinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (101 aa)
	AOH47551.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
	AOH47642.1	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	AOH47699.1	Iron permease FTR1; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	AOH47700.1	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	AOH47701.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	AOH48311.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AOH48313.1	Trk system potassium transport protein TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
	AOH48337.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
	AOH48338.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (372 aa)
	AOH48387.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AOH48388.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AOH48391.1	Cobalt chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	AOH48397.1	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AOH48606.1	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	AOH48659.1	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	tatC	Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (274 aa)
	tatA	Preprotein translocase subunit TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (72 aa)
	tatA-2	DNA replication protein DnaD; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (113 aa)
	AOH48727.1	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)

Your Current Organism:

Selenomonas

NCBI taxonomy Id: 1884263
Other names: S. sp. oral taxon 920, Selenomonas sp. oral taxon 920

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOH47252.1	AOH47253.1	BCS37_01800	BCS37_01805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MlaE permease family.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AOH47252.1	AOH48606.1	BCS37_01800	BCS37_09205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MlaE permease family.	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
AOH47253.1	AOH47252.1	BCS37_01805	BCS37_01800	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MlaE permease family.	0.989
AOH47253.1	AOH48337.1	BCS37_01805	BCS37_07710	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
AOH47428.1	AOH47699.1	BCS37_02750	BCS37_04230	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron permease FTR1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AOH47428.1	AOH48387.1	BCS37_02750	BCS37_08005	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
AOH47547.1	AOH47551.1	BCS37_03380	BCS37_03400	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOH47547.1	AOH48727.1	BCS37_03380	BCS37_09850	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AOH47547.1	nuoB	BCS37_03380	BCS37_03360	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.999
AOH47547.1	nuoK	BCS37_03380	BCS37_03390	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-quinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.	0.999
AOH47551.1	AOH47547.1	BCS37_03400	BCS37_03380	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOH47551.1	nuoB	BCS37_03400	BCS37_03360	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.999
AOH47551.1	nuoK	BCS37_03400	BCS37_03390	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-quinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.	0.999
AOH47642.1	AOH47699.1	BCS37_03920	BCS37_04230	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron permease FTR1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AOH47642.1	AOH48387.1	BCS37_03920	BCS37_08005	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AOH47699.1	AOH47428.1	BCS37_04230	BCS37_02750	Iron permease FTR1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AOH47699.1	AOH47642.1	BCS37_04230	BCS37_03920	Iron permease FTR1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AOH47699.1	AOH47700.1	BCS37_04230	BCS37_04235	Iron permease FTR1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AOH47699.1	AOH47701.1	BCS37_04230	BCS37_04240	Iron permease FTR1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AOH47699.1	AOH48388.1	BCS37_04230	BCS37_08010	Iron permease FTR1; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489