STRINGSTRING
pcaB-2 pcaB-2 shc shc ANB10715.1 ANB10715.1 ANB10743.1 ANB10743.1 rbsD rbsD ANB04125.1 ANB04125.1 pcaB pcaB ino ino ANB09582.1 ANB09582.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pcaB-23-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
shcSqualene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (688 aa)
ANB10715.1Myo-inositol-1-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
ANB10743.13-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
rbsDRibose ABC transporter; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (129 aa)
ANB04125.1Myo-inositol-1-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
pcaB3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
inoInositol-3-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
ANB09582.1Myo-inositol-1-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
Your Current Organism:
Streptomyces ambofaciens
NCBI taxonomy Id: 1889
Other names: ATCC 23877, BCRC 11857, CBS 616.68, CCRC 11857, CCRC:11857, CECT 3101, DSM 40053, IFO 12836, ISP 5053, JCM 4204, JCM 4618, KCTC 9111, NBRC 12836, NRRL 2420, NRRL B-2516, NRRL-ISP 5053, S. ambofaciens
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