STRINGSTRING
rpl10e rpl10e rpl18e rpl18e rps9 rps9 rps2 rps2 rpl44e rpl44e rps15 rps15 rpl3 rpl3 rpl23 rpl23 rpl2 rpl2 rpl22 rpl22 rpl29 rpl29 rpl14 rpl14 rpl24 rpl24 rpl5 rpl5 rps8 rps8 rpl6 rpl6 rpl32e rpl32e rpl19e rpl19e rpl18 rpl18 rpl30 rpl30 rps13 rps13 rps4 rps4 rps11 rps11 rps10 rps10 rps7 rps7 rps12 rps12 rpl30e rpl30e rpl21e rpl21e rpl24e rpl24e rps6e rps6e rpl37ae rpl37ae rpl15e rpl15e rpl37e rpl37e rps24e rps24e rpl40e rpl40e rpl18a rpl18a rpl31e rpl31e rps19e rps19e rpl11 rpl11 rpl12 rpl12 rps17e rps17e
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl10eRibosomal protein L10e; Belongs to the universal ribosomal protein uL16 family. (173 aa)
rpl18eRibosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family. (138 aa)
rps9Ribosomal protein S9p; Belongs to the universal ribosomal protein uS9 family. (134 aa)
rps2Ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family. (247 aa)
rpl44eRibosomal protein L44e; Binds to the 23S rRNA. (92 aa)
rps15Ribosomal protein S15p. (152 aa)
rpl3Ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (337 aa)
rpl23Ribosomal protein L23p; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (82 aa)
rpl2Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (238 aa)
rpl22Ribosomal protein L22p; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (151 aa)
rpl29Ribosomal protein L29p; Belongs to the universal ribosomal protein uL29 family. (67 aa)
rpl14Ribosomal protein L14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa)
rpl24Ribosomal protein L24p; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (119 aa)
rpl5Ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (165 aa)
rps8Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rpl6Ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (176 aa)
rpl32eRibosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family. (161 aa)
rpl19eRibosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (151 aa)
rpl18Ribosomal protein L18p; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (174 aa)
rpl30Ribosomal protein L30p. (153 aa)
rps13Ribosomal protein S13p; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (182 aa)
rps4Ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (218 aa)
rps11Ribosomal protein S11p; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (126 aa)
rps10Ribosomal protein S10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
rps7Ribosomal protein S7p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (189 aa)
rps12Ribosomal protein S12p; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (142 aa)
rpl30eRibosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family. (99 aa)
rpl21eRibosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa)
rpl24eRibosomal protein L24e; Binds to the 23S rRNA. (62 aa)
rps6eRibosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (136 aa)
rpl37aeRibosomal protein L37ae; Binds to the 23S rRNA. (94 aa)
rpl15eRibosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family. (196 aa)
rpl37eRibosomal protein L37; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (56 aa)
rps24eRibosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (101 aa)
rpl40eRibosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. (52 aa)
rpl18aRibosomal protein LX. (61 aa)
rpl31eRibosomal protein L31e; Belongs to the eukaryotic ribosomal protein eL31 family. (89 aa)
rps19eRibosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (149 aa)
rpl11Ribosomal protein L11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (161 aa)
rpl12Ribosomal protein L12p; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (104 aa)
rps17eRibosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family. (64 aa)
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.