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rpl15e rpl15e rpl7ae rpl7ae rpl21e rpl21e rpl30e rpl30e rpl15 rpl15 rpl30 rpl30 rpl18 rpl18 rpl10 rpl10 rpl1 rpl1 rpl11 rpl11 rpl19e rpl19e rpl32e rpl32e rpl6 rpl6 rpl5 rpl5 rpl24 rpl24 rpl14 rpl14 rpl22 rpl22 rpl2 rpl2 rpl10e rpl10e rpl13 rpl13 rpl18e rpl18e rpl3 rpl3 rpl4 rpl4 rpl23 rpl23 rpl39e rpl39e rpl31e rpl31e rpl37e rpl37e
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl15eRibosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family. (196 aa)
rpl7aeRibosomal protein L7ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (120 aa)
rpl21eRibosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa)
rpl30eRibosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family. (99 aa)
rpl15Ribosomal protein L15p; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (140 aa)
rpl30Ribosomal protein L30p. (153 aa)
rpl18Ribosomal protein L18p; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (174 aa)
rpl10Acidic ribosomal protein P0-like protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (347 aa)
rpl1Ribosomal protein L1p; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (213 aa)
rpl11Ribosomal protein L11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (161 aa)
rpl19eRibosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (151 aa)
rpl32eRibosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family. (161 aa)
rpl6Ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (176 aa)
rpl5Ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (165 aa)
rpl24Ribosomal protein L24p; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (119 aa)
rpl14Ribosomal protein L14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa)
rpl22Ribosomal protein L22p; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (151 aa)
rpl2Ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (238 aa)
rpl10eRibosomal protein L10e; Belongs to the universal ribosomal protein uL16 family. (173 aa)
rpl13Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (143 aa)
rpl18eRibosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family. (138 aa)
rpl3Ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (337 aa)
rpl4Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (253 aa)
rpl23Ribosomal protein L23p; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (82 aa)
rpl39eRibosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family. (51 aa)
rpl31eRibosomal protein L31e; Belongs to the eukaryotic ribosomal protein eL31 family. (89 aa)
rpl37eRibosomal protein L37; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (56 aa)
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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