(14 nodes) Mixed, incl. Small ribosomal subunit, and Initiation factor network (Sulfolobus sp. A20)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	eif2a	Translation initiation factor IF-2 subunit alpha; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family. (268 aa)
	rps3ae	30S ribosomal protein S3ae; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family. (208 aa)
	rps19p	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa)
	rps3	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (225 aa)
	rps17	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (114 aa)
	rps4e	30S ribosomal protein S4e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS4 family. (239 aa)
	rps14P	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles. (54 aa)
	rps8	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (133 aa)
	AOL15957.1	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family. (100 aa)
	rps19e	30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (154 aa)
	rps7	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (193 aa)
	rps28e	30S ribosomal protein S28e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS28 family. (83 aa)
	rps4	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (180 aa)
	rps2	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family. (216 aa)

Your Current Organism:

Sulfolobus sp. A20

NCBI taxonomy Id: 1891280
Other names: S. sp. A20

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOL15957.1	eif2a	BFU36_03590	BFU36_01250	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	Translation initiation factor IF-2 subunit alpha; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.	0.993
AOL15957.1	rps14P	BFU36_03590	BFU36_02535	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.	0.999
AOL15957.1	rps17	BFU36_03590	BFU36_02510	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999
AOL15957.1	rps19e	BFU36_03590	BFU36_04065	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.999
AOL15957.1	rps19p	BFU36_03590	BFU36_02485	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
AOL15957.1	rps2	BFU36_03590	BFU36_05510	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.	0.999
AOL15957.1	rps28e	BFU36_03590	BFU36_04580	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S28e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS28 family.	0.999
AOL15957.1	rps3	BFU36_03590	BFU36_02495	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.999
AOL15957.1	rps3ae	BFU36_03590	BFU36_02345	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S3ae; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
AOL15957.1	rps4	BFU36_03590	BFU36_05475	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
AOL15957.1	rps4e	BFU36_03590	BFU36_02525	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S4e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
AOL15957.1	rps7	BFU36_03590	BFU36_04525	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.	0.999
AOL15957.1	rps8	BFU36_03590	BFU36_02540	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.999
eif2a	AOL15957.1	BFU36_01250	BFU36_03590	Translation initiation factor IF-2 subunit alpha; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.	Translation initiation factor Sui1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family.	0.993
eif2a	rps14P	BFU36_01250	BFU36_02535	Translation initiation factor IF-2 subunit alpha; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.	0.999
eif2a	rps17	BFU36_01250	BFU36_02510	Translation initiation factor IF-2 subunit alpha; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999
eif2a	rps19e	BFU36_01250	BFU36_04065	Translation initiation factor IF-2 subunit alpha; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.	30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.999
eif2a	rps19p	BFU36_01250	BFU36_02485	Translation initiation factor IF-2 subunit alpha; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
eif2a	rps2	BFU36_01250	BFU36_05510	Translation initiation factor IF-2 subunit alpha; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.	0.999
eif2a	rps28e	BFU36_01250	BFU36_04580	Translation initiation factor IF-2 subunit alpha; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.	30S ribosomal protein S28e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS28 family.	0.999