Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AOL15663.1 | AOL15982.1 | BFU36_01740 | BFU36_03745 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.735 |
| AOL15663.1 | AOL16166.1 | BFU36_01740 | BFU36_04930 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.718 |
| AOL15663.1 | AOL16942.1 | BFU36_01740 | BFU36_09735 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.627 |
| AOL15663.1 | AOL17076.1 | BFU36_01740 | BFU36_10580 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.701 |
| AOL15663.1 | AOL17077.1 | BFU36_01740 | BFU36_10585 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-processing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AOL15663.1 | nep1 | BFU36_01740 | BFU36_09775 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | 16S rRNA methyltransferase; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.999 |
| AOL15663.1 | rps6e | BFU36_01740 | BFU36_03755 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S6e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.999 |
| AOL15663.1 | rtcA | BFU36_01740 | BFU36_10900 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA 3'-terminal-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.999 |
| AOL15663.1 | tmcA | BFU36_01740 | BFU36_03865 | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA(Met) cytidine acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.982 |
| AOL15982.1 | AOL15663.1 | BFU36_03745 | BFU36_01740 | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.735 |
| AOL15982.1 | AOL16166.1 | BFU36_03745 | BFU36_04930 | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.664 |
| AOL15982.1 | AOL16942.1 | BFU36_03745 | BFU36_09735 | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.660 |
| AOL15982.1 | AOL17076.1 | BFU36_03745 | BFU36_10580 | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.487 |
| AOL15982.1 | AOL17077.1 | BFU36_03745 | BFU36_10585 | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-processing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AOL15982.1 | nep1 | BFU36_03745 | BFU36_09775 | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | 16S rRNA methyltransferase; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.862 |
| AOL15982.1 | rps6e | BFU36_03745 | BFU36_03755 | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S6e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.927 |
| AOL15982.1 | rtcA | BFU36_03745 | BFU36_10900 | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA 3'-terminal-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.651 |
| AOL15982.1 | tmcA | BFU36_03745 | BFU36_03865 | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA(Met) cytidine acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.562 |
| AOL16166.1 | AOL15663.1 | BFU36_04930 | BFU36_01740 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.718 |
| AOL16166.1 | AOL15982.1 | BFU36_04930 | BFU36_03745 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.664 |
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