(11 nodes) Small ribosomal subunit network (Sulfolobus sp. A20)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps4	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (180 aa)
	top6B	DNA topoisomerase VI subunit B; Relaxes both positive and negative superturns and exhibits a strong decatenase activity. (531 aa)
	rps19p	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa)
	rps3	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (225 aa)
	rps14P	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles. (54 aa)
	rps5	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (214 aa)
	AOL15885.1	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
	rps10	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
	rps7	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (193 aa)
	rps12	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (147 aa)
	rps2	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family. (216 aa)

Your Current Organism:

Sulfolobus sp. A20

NCBI taxonomy Id: 1891280
Other names: S. sp. A20

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOL15885.1	rps10	BFU36_03165	BFU36_04515	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
AOL15885.1	rps12	BFU36_03165	BFU36_04535	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.	0.999
AOL15885.1	rps14P	BFU36_03165	BFU36_02535	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.	0.999
AOL15885.1	rps19p	BFU36_03165	BFU36_02485	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
AOL15885.1	rps2	BFU36_03165	BFU36_05510	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.	0.999
AOL15885.1	rps3	BFU36_03165	BFU36_02495	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.999
AOL15885.1	rps4	BFU36_03165	BFU36_05475	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
AOL15885.1	rps5	BFU36_03165	BFU36_02565	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.	0.999
AOL15885.1	rps7	BFU36_03165	BFU36_04525	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.	0.999
rps10	AOL15885.1	BFU36_04515	BFU36_03165	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rps10	rps12	BFU36_04515	BFU36_04535	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.	0.999
rps10	rps14P	BFU36_04515	BFU36_02535	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.	0.999
rps10	rps19p	BFU36_04515	BFU36_02485	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
rps10	rps2	BFU36_04515	BFU36_05510	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.	0.999
rps10	rps3	BFU36_04515	BFU36_02495	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.999
rps10	rps4	BFU36_04515	BFU36_05475	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rps10	rps5	BFU36_04515	BFU36_02565	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.	0.999
rps10	rps7	BFU36_04515	BFU36_04525	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.	0.999
rps12	AOL15885.1	BFU36_04535	BFU36_03165	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.	30S ribosomal protein S26e; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rps12	rps10	BFU36_04535	BFU36_04515	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999