(23 nodes) Nitrogen metabolism network (Paenibacillus graminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIQ66567.1	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	AIQ67202.1	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1531 aa)
	AIQ67563.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AIQ67920.1	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	AIQ68667.1	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (457 aa)
	AIQ68889.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (809 aa)
	AIQ68890.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
	AIQ69029.1	Nitrate/nitrite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)
	AIQ69034.1	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	narH	Nitrate reductase; With NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	narZ	Nitrate reductase; With NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1224 aa)
	AIQ69042.1	NAD(P)H-nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	AIQ69185.1	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	AIQ69230.1	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
	AIQ69467.1	Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
	AIQ70027.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
	AIQ70028.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (808 aa)
	AIQ70762.1	Nitrogenase molybdenum-iron protein subunit beta; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. (519 aa)
	nifD	Nitrogenase molybdenum-iron protein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	nifH	Nitrogenase reductase; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (288 aa)
	AIQ71292.1	Ferredoxin--nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (543 aa)
	hcp	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (547 aa)
	AIQ71621.1	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)

Your Current Organism:

Paenibacillus graminis

NCBI taxonomy Id: 189425
Other names: ATCC BAA-95, DSM 15220, LMG 19080, LMG:19080, P. graminis, Paenibacillus graminis Berge et al. 2002, Paenibacillus sp. RSA19, strain RSA19

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIQ66567.1	AIQ67202.1	PGRAT_02055	PGRAT_05795	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AIQ66567.1	AIQ67920.1	PGRAT_02055	PGRAT_10000	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AIQ66567.1	AIQ68667.1	PGRAT_02055	PGRAT_14350	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.948
AIQ66567.1	AIQ69185.1	PGRAT_02055	PGRAT_17280	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AIQ66567.1	AIQ69230.1	PGRAT_02055	PGRAT_17560	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AIQ66567.1	AIQ71292.1	PGRAT_02055	PGRAT_29705	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin--nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.692
AIQ66567.1	narH	PGRAT_02055	PGRAT_16430	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; With NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AIQ67202.1	AIQ66567.1	PGRAT_05795	PGRAT_02055	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AIQ67202.1	AIQ67920.1	PGRAT_05795	PGRAT_10000	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AIQ67202.1	AIQ68667.1	PGRAT_05795	PGRAT_14350	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.997
AIQ67202.1	AIQ68889.1	PGRAT_05795	PGRAT_15625	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.740
AIQ67202.1	AIQ68890.1	PGRAT_05795	PGRAT_15630	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AIQ67202.1	AIQ69029.1	PGRAT_05795	PGRAT_16395	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate/nitrite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AIQ67202.1	AIQ69042.1	PGRAT_05795	PGRAT_16465	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(P)H-nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AIQ67202.1	AIQ69185.1	PGRAT_05795	PGRAT_17280	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AIQ67202.1	AIQ69230.1	PGRAT_05795	PGRAT_17560	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AIQ67202.1	AIQ70027.1	PGRAT_05795	PGRAT_22040	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AIQ67202.1	AIQ70028.1	PGRAT_05795	PGRAT_22045	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.740
AIQ67202.1	AIQ71292.1	PGRAT_05795	PGRAT_29705	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin--nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.782
AIQ67202.1	narZ	PGRAT_05795	PGRAT_16435	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; With NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.447

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