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| | cas1 | Subtype I-C CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (346 aa) |
| | OJY38309.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (334 aa) |
| | mutM | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (294 aa) |
| | dnaA | Chromosomal replication initiation protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (491 aa) |
| | OJY37227.1 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (372 aa) |
| | recF | DNA replication/repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (378 aa) |
| | xseB | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (84 aa) |
| | OJY37382.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa) |
| | uvrA | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (972 aa) |
| | OJY37659.1 | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (171 aa) |
| | gyrA | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (905 aa) |
| | OJY37678.1 | Protein deglycase HchA; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa) |
| | OJY34283.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (2123 aa) |
| | OJY34291.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (200 aa) |
| | recA | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (344 aa) |
| | OJY34375.1 | Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (413 aa) |
| | OJY34388.1 | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (133 aa) |
| | OJY34392.1 | Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) |
| | OJY35849.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (160 aa) |
| | OJY35851.1 | ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa) |
| | uvrB | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (954 aa) |
| | polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (1042 aa) |
| | OJY36116.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (597 aa) |
| | OJY36139.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa) |
| | OJY36117.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (499 aa) |
| | OJY39243.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (428 aa) |
| | OJY35290.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (137 aa) |
| | BGP06_05305 | IS5 family transposase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (65 aa) |
| | OJY35353.1 | Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family. (495 aa) |
| | lexA | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (232 aa) |
| | OJY35419.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DnaA family. (243 aa) |
| | OJY35431.1 | ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method: Protein Homology. (700 aa) |
| | OJY35473.1 | Ribosomal protein L3 N(5)-glutamine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the protein N5-glutamine methyltransferase family. (301 aa) |
| | OJY35550.1 | AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa) |
| | OJY35599.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (94 aa) |
| | OJY35665.1 | DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa) |
| | OJY35684.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa) |
| | ihfA | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (103 aa) |
| | OJY33876.1 | Site-specific DNA-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family. (247 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (346 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (205 aa) |
| | OJY38726.1 | Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa) |
| | BGP06_09515 | Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa) |
| | OJY34592.1 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa) |
| | dnaQ | DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (246 aa) |
| | OJY33215.1 | GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa) |
| | OJY33268.1 | uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa) |
| | cas2 | CRISPR-associated endonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (96 aa) |
| | OJY32174.1 | Type I-C CRISPR-associated protein Cas7/Csd2; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa) |
| | OJY32176.1 | Type I-C CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa) |
| | ung | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (232 aa) |
| | OJY32874.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (483 aa) |
| | OJY32908.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (375 aa) |
| | OJY32924.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (175 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (240 aa) |
| | radA | Hypothetical protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (471 aa) |
| | BGP06_11900 | Alanine racemase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (494 aa) |
| | dinB | Hypothetical protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (423 aa) |
| | OJY38360.1 | IS110 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa) |
| | OJY38361.1 | Replication protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa) |
| | BGP06_13035 | IS21 family transposase; Metagenomic; derived from metagenome: bioreactor metagenome. (301 aa) |
| | OJY39332.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa) |
| | xerC | Hypothetical protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (311 aa) |
| | OJY36696.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (126 aa) |
| | OJY36697.1 | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa) |
| | OJY36706.1 | ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (870 aa) |
| | ku | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (290 aa) |
| | OJY36933.1 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. (1239 aa) |
| | parC | DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (748 aa) |
| | OJY36840.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (488 aa) |
| | OJY36842.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa) |
| | OJY36955.1 | IS5 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa) |
| | OJY36954.1 | IS5 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa) |
| | OJY36960.1 | Ribonucleoside-diphosphate reductase subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (962 aa) |
| | OJY36894.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (130 aa) |
| | OJY36918.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (79 aa) |
| | OJY37905.1 | Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa) |
| | OJY38039.1 | ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa) |
| | xseA | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (526 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (809 aa) |
| | apaG | Co2+/Mg2+ efflux protein ApaG; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa) |
| | BGP06_17095 | Dihydroxy-acid dehydratase; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. (128 aa) |
| | OJY38147.1 | DNA (cytosine-5-)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (381 aa) |
| | nth | Maltose acetyltransferase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (236 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (200 aa) |
| | BGP06_17320 | Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa) |
| | OJY40197.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa) |
| | BGP06_17425 | Transposase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa) |
| | OJY34671.1 | NTP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa) |
| | OJY34687.1 | DNA helicase; Unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa) |
| | OJY34735.1 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. (370 aa) |
| | smc | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1153 aa) |
| | OJY34798.1 | Modification methylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family. (362 aa) |
| | OJY34800.1 | Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa) |
| | OJY35086.1 | Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (95 aa) |
| | OJY35090.1 | Double-strand break repair helicase AddA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily. (1168 aa) |
| | mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (902 aa) |
| | ligA | DNA ligase (NAD(+)) LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (718 aa) |
| | OJY37020.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (324 aa) |
| | OJY37025.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa) |
| | OJY37028.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (532 aa) |
| | OJY37051.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa) |
| | BGP06_19530 | Transposase; Frameshifted; internal stop; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa) |
| | OJY38794.1 | Primosomal protein N; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa) |
| | xerD | Site-specific tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (314 aa) |
| | OJY36569.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa) |
| | dnaE2 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1240 aa) |
| | OJY36584.1 | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa) |
