(5 nodes) beta-Alanine metabolism, and Amidase, carbamoylase-type network (Betaproteobacteria bacterium GR1643)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APV49505.1	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
	APV49506.1	Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	APV49507.1	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	APV49508.1	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	APV52343.1	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)

Your Current Organism:

Betaproteobacteria bacterium GR1643

NCBI taxonomy Id: 1904640
Other names: B. bacterium GR16-43, Betaproteobacteria bacterium GR16-43, Nnibrrimonas geomnyongensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APV49505.1	APV49506.1	BWI17_07310	BWI17_07315	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APV49505.1	APV49507.1	BWI17_07310	BWI17_07320	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
APV49505.1	APV49508.1	BWI17_07310	BWI17_07325	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APV49505.1	APV52343.1	BWI17_07310	BWI17_07330	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
APV49506.1	APV49505.1	BWI17_07315	BWI17_07310	Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APV49506.1	APV49507.1	BWI17_07315	BWI17_07320	Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
APV49506.1	APV49508.1	BWI17_07315	BWI17_07325	Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APV49506.1	APV52343.1	BWI17_07315	BWI17_07330	Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
APV49507.1	APV49505.1	BWI17_07320	BWI17_07310	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
APV49507.1	APV49506.1	BWI17_07320	BWI17_07315	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
APV49507.1	APV49508.1	BWI17_07320	BWI17_07325	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
APV49507.1	APV52343.1	BWI17_07320	BWI17_07330	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
APV49508.1	APV49505.1	BWI17_07325	BWI17_07310	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APV49508.1	APV49506.1	BWI17_07325	BWI17_07315	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APV49508.1	APV49507.1	BWI17_07325	BWI17_07320	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
APV49508.1	APV52343.1	BWI17_07325	BWI17_07330	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APV52343.1	APV49505.1	BWI17_07330	BWI17_07310	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
APV52343.1	APV49506.1	BWI17_07330	BWI17_07315	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
APV52343.1	APV49507.1	BWI17_07330	BWI17_07320	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
APV52343.1	APV49508.1	BWI17_07330	BWI17_07325	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995