STRINGSTRING
APV48239.1 APV48239.1 APV48240.1 APV48240.1 panC panC panB panB APV52215.1 APV52215.1 APV48249.1 APV48249.1 APV48506.1 APV48506.1 APV48507.1 APV48507.1 APV48509.1 APV48509.1 APV48510.1 APV48510.1 birA birA coaX coaX APV48513.1 APV48513.1 APV48686.1 APV48686.1 queE queE APV48688.1 APV48688.1 APV48689.1 APV48689.1 APV48690.1 APV48690.1 APV48691.1 APV48691.1 APV52336.1 APV52336.1 APV49450.1 APV49450.1 APV49478.1 APV49478.1 APV49480.1 APV49480.1 APV49559.1 APV49559.1 folE2 folE2 APV49808.1 APV49808.1 APV52386.1 APV52386.1 APV50032.1 APV50032.1 queG queG tgt tgt APV50176.1 APV50176.1 APV50350.1 APV50350.1 APV50675.1 APV50675.1 APV50978.1 APV50978.1 folE folE queC queC queF queF queA queA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APV48239.1Murein hydrolase effector protein LrgB; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
APV48240.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
panCPantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (275 aa)
panB3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. (263 aa)
APV52215.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
APV48249.12-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
APV48506.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
APV48507.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (284 aa)
APV48509.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
APV48510.1Haloacid dehalogenase-like hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
birAbiotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. (327 aa)
coaXHypothetical protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis. (244 aa)
APV48513.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (218 aa)
APV48686.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
queE7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. (218 aa)
APV48688.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
APV48689.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (94 aa)
APV48690.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
APV48691.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
APV52336.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
APV49450.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
APV49478.1Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)
APV49480.1Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alkaline phosphatase family. (671 aa)
APV49559.1Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
folE2GTP cyclohydrolase; Converts GTP to 7,8-dihydroneopterin triphosphate. (265 aa)
APV49808.1Dihydroneopterin triphosphate diphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. (152 aa)
APV52386.1Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives. (281 aa)
APV50032.12-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (312 aa)
queGtRNA epoxyqueuosine(34) reductase QueG; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (351 aa)
tgttRNA guanosine(34) transglycosylase Tgt; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose t [...] (375 aa)
APV50176.12-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (306 aa)
APV50350.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
APV50675.12-dehydropantoate 2-reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
APV50978.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
folEGTP cyclohydrolase I FolE; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
queC7-cyano-7-deazaguanine synthase QueC; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. (227 aa)
queFNADPH-dependent 7-cyano-7-deazaguanine reductase QueF; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. (138 aa)
queAtRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). (341 aa)
Your Current Organism:
Betaproteobacteria bacterium GR1643
NCBI taxonomy Id: 1904640
Other names: B. bacterium GR16-43, Betaproteobacteria bacterium GR16-43, Nnibrrimonas geomnyongensis
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