(21 nodes) Signal transduction histidine kinase, dimerisation/phosphoacceptor domain, and PAS fold-4 network (Betaproteobacteria bacterium GR1643)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APV48297.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (550 aa)
	APV48348.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	APV48350.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (709 aa)
	APV48351.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1811 aa)
	APV48533.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (749 aa)
	APV48555.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (740 aa)
	APV48826.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (606 aa)
	APV49044.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)
	APV49452.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	APV49907.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (870 aa)
	APV49915.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (812 aa)
	APV50000.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
	APV50291.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (647 aa)
	APV50555.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1336 aa)
	APV50887.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	APV50921.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (728 aa)
	APV51370.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	APV51531.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1137 aa)
	APV51554.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	APV51928.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (868 aa)
	APV51938.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)

Your Current Organism:

Betaproteobacteria bacterium GR1643

NCBI taxonomy Id: 1904640
Other names: B. bacterium GR16-43, Betaproteobacteria bacterium GR16-43, Nnibrrimonas geomnyongensis

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APV48297.1	APV48348.1	BWI17_00535	BWI17_00790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
APV48297.1	APV48350.1	BWI17_00535	BWI17_00800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
APV48297.1	APV48351.1	BWI17_00535	BWI17_00805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
APV48297.1	APV48533.1	BWI17_00535	BWI17_01815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
APV48297.1	APV48555.1	BWI17_00535	BWI17_01950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
APV48297.1	APV48826.1	BWI17_00535	BWI17_03515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
APV48297.1	APV49044.1	BWI17_00535	BWI17_04710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
APV48297.1	APV49452.1	BWI17_00535	BWI17_07010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
APV48297.1	APV49907.1	BWI17_00535	BWI17_09555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
APV48297.1	APV49915.1	BWI17_00535	BWI17_09595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
APV48297.1	APV50000.1	BWI17_00535	BWI17_10080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
APV48297.1	APV50291.1	BWI17_00535	BWI17_11660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
APV48297.1	APV50555.1	BWI17_00535	BWI17_13170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
APV48297.1	APV50887.1	BWI17_00535	BWI17_15035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
APV48297.1	APV50921.1	BWI17_00535	BWI17_15220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
APV48297.1	APV51370.1	BWI17_00535	BWI17_17745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
APV48297.1	APV51531.1	BWI17_00535	BWI17_18650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
APV48297.1	APV51554.1	BWI17_00535	BWI17_18775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
APV48297.1	APV51928.1	BWI17_00535	BWI17_20975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
APV48297.1	APV51938.1	BWI17_00535	BWI17_21055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902