STRINGSTRING
XCC2798 XCC2798 gtrB-4 gtrB-4 XCC3286 XCC3286 XCC1680 XCC1680 XCC1675 XCC1675 kdtA kdtA XCC3339 XCC3339 XCC3340 XCC3340 XCC3744 XCC3744 XCC3745 XCC3745 XCC3746 XCC3746 dpm1 dpm1 oac oac XCC3871 XCC3871 XCC1671 XCC1671 XCC1119 XCC1119 yjdB yjdB XCC1011 XCC1011 XCC1010 XCC1010 XCC1009 XCC1009 kdkA kdkA opsX opsX gtrB-2 gtrB-2 ipsJ ipsJ ipsI ipsI xanA xanA xanB xanB rmlD rmlD rmlA rmlA rmlB rmlB wxcK wxcK wxcL wxcL wxcD wxcD wxcA wxcA lgtB lgtB rfbD-2 rfbD-2 gumH gumH gumJ gumJ XCC2189 XCC2189 lpxK lpxK kdsB kdsB XCC2011 XCC2011 vioA vioA kdsA kdsA gumC gumC XCC1679 XCC1679
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XCC2798Conserved hypothetical protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. (182 aa)
gtrB-4Glucosyl transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (347 aa)
XCC3286Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (198 aa)
XCC1680Hexosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (387 aa)
XCC1675Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark. (301 aa)
kdtA3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (439 aa)
XCC3339Membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (444 aa)
XCC3340Glycosyl transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (370 aa)
XCC3744Lipopolysaccharide core biosynthesis glycosyl transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (274 aa)
XCC3745Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (429 aa)
XCC3746Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (556 aa)
dpm1Dolichol-phosphate mannosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (240 aa)
oacAcyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (374 aa)
XCC3871Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark. (179 aa)
XCC1671Aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DegT/DnrJ/EryC1 family. (380 aa)
XCC1119Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (588 aa)
yjdBInner membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (551 aa)
XCC1011Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (141 aa)
XCC1010Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (166 aa)
XCC1009Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (618 aa)
kdkAConserved hypothetical protein; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. (249 aa)
opsXSaccharide biosynthesis regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (348 aa)
gtrB-2Glycosyl transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (378 aa)
ipsJIpsJ protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (213 aa)
ipsI3-oxoadipate CoA-succinyl transferase alpha subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (242 aa)
xanAPhosphoglucomutase; Involved in xanthan production. (450 aa)
xanBPhosphomannose isomerase/GDP-mannose pyrophosphorylase; Involved in xanthan production. (467 aa)
rmlDdTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (302 aa)
rmlAGlucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis; Belongs to the glucose-1-phosphate thymidylyltransferase family. (296 aa)
rmlBdTDP-glucose 4,6-dehydratase; Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6- deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (351 aa)
wxcKAminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DegT/DnrJ/EryC1 family. (367 aa)
wxcLGlycosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (323 aa)
wxcDMembrane protein WxcD; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (580 aa)
wxcAGlycosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (461 aa)
lgtBGlycosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (269 aa)
rfbD-2UDP-galactopyranose mutase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (398 aa)
gumHGumH protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (380 aa)
gumJGumJ protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (499 aa)
XCC2189Epimerase/dehydratase protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (612 aa)
lpxKLipid A 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). (351 aa)
kdsB3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (250 aa)
XCC2011Exopolysaccharide biosynthesis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (361 aa)
vioANucleotide sugar transaminase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DegT/DnrJ/EryC1 family. (429 aa)
kdsA2-dehydro-3-deoxyphosphooctonate aldolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the KdsA family. (276 aa)
gumCGumC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (449 aa)
XCC1679Glycosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (374 aa)
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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