STRINGSTRING
srfJ srfJ XCC1251 XCC1251 bga bga XCC1756 XCC1756 fucA1 fucA1 nahA nahA XCC2891 XCC2891 aspG-2 aspG-2 XCC4116 XCC4116
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
srfJGlycosyl hydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 30 family. (548 aa)
XCC1251Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (642 aa)
bgaBeta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 2 family. (926 aa)
XCC1756Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (790 aa)
fucA1alpha-L-fucosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (561 aa)
nahABeta-hexosaminidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (1090 aa)
XCC2891Beta-mannosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (893 aa)
aspG-2Asparaginase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (316 aa)
XCC4116Beta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 2 family. (963 aa)
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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