STRINGSTRING
fabV fabV yfcY yfcY gctA gctA gctB gctB ipsI ipsI ipsJ ipsJ fadB-2 fadB-2 atoB atoB phaZ phaZ crt crt mvaB mvaB fadB-3 fadB-3 sdhB sdhB sdhA sdhA sdhD sdhD sdhC sdhC phbC phbC phaE-2 phaE-2 hbdH1 hbdH1 phbB phbB gabD gabD ilvG ilvG ilvM ilvM phbB-2 phbB-2 XCC3588 XCC3588
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fabVConserved hypothetical protein; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family. (402 aa)
yfcYacyl-CoA thiolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the thiolase-like superfamily. Thiolase family. (431 aa)
gctAGlutaconate CoA transferase subunit A; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (287 aa)
gctBGlutaconate CoA transferase subunit B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (262 aa)
ipsI3-oxoadipate CoA-succinyl transferase alpha subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (242 aa)
ipsJIpsJ protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (213 aa)
fadB-23-hydroxyacyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (690 aa)
atoBacetoacetyl-CoA thiolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
phaZPHB depolymerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (466 aa)
crt3-hydroxybutyryl-CoA dehydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
mvaBhydroxymethylglutaryl-CoA lyase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (298 aa)
fadB-33-hydroxyacyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (790 aa)
sdhBSuccinate dehydrogenase iron-sulfur protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (260 aa)
sdhASuccinate dehydrogenase flavoprotein subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (596 aa)
sdhDSuccinate dehydrogenase membrane anchor subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (128 aa)
sdhCSuccinate dehydrogenase membrane anchor subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (131 aa)
phbCPoly (3-hydroxybutyric acid) synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (358 aa)
phaE-2PHA synthase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (387 aa)
hbdH1D-beta-hydroxybutyrate dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (252 aa)
phbBacetoacetyl-CoA reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (250 aa)
gabDSuccinate-semialdehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (454 aa)
ilvGAcetolactate synthase isozyme II large subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (573 aa)
ilvMAcetolactate synthase isozyme II small subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (85 aa)
phbB-2acetoacetyl-coA reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (246 aa)
XCC3588CoA tranferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (504 aa)
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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